diff_AB: this is kind of a helper function, but useful enough to split...

In trichelab/velocessor: The world's dumbest single-cell RNA velocity calculator and loader

Description

Given compartment estimates A and B, compute estimates of their differences.

Usage

diff_AB(A, B, conf = 0.75, steps = 1, what = "counts", stubs = c("A", "B"))

Arguments

A	a GRanges
B	a GRanges
conf	what quantile to use for confidence intervals (.75, quartiles)
steps	how many bins to use for the weighted smoother (1; don't smooth)
what	what assay fed the original A and B calls? (counts; see Details)
stubs	what stubs to use for the difference variables? (c("A","B"))

Details

what is left open for future use comparing unspliced/spliced ratios. It has no effect upon the execution of this function at the moment. Note that if using the weighted smoother (steps > 1), then steps MUST be odd.

Value

 a GRanges with differences between A and B and damped bounds

trichelab/velocessor documentation built on Jan. 5, 2022, 6:27 p.m.