get_sample_from_barcode: Extract the sample/batch name for each cell from a...
In trichelab/velocessor: The world's dumbest single-cell RNA velocity calculator and loader
Description
Usage
Arguments
Value
View source: R/get_sample_from_barcode.R
Description
This function assumes that process_velo_txis or similar has renamed the cell
barcodes (colnames) in a SingleCellExperiment to indicate whence they came,
and pops the last element of the split vector off the end. This is handy
for running Harmony as a first pass to get rid of batch effects, although
the right way to do this while respecting spliced-unspliced relationships
is currently an open research problem.
Usage
1
get_sample_from_barcode(txis, sep = "_")
Arguments
txis
SingleCellExperiment or vector with entries like FOO_BAR_AATGCT
sep
the separator character used to paste the column names ("_")
Value
1
trichelab/velocessor documentation built on Jan. 5, 2022, 6:27 p.m.
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Description Usage Arguments Value
View source: R/get_sample_from_barcode.R
Description
This function assumes that process_velo_txis or similar has renamed the cell barcodes (colnames) in a SingleCellExperiment to indicate whence they came, and pops the last element of the split vector off the end. This is handy for running Harmony as a first pass to get rid of batch effects, although the right way to do this while respecting spliced-unspliced relationships is currently an open research problem.
Usage
1 | get_sample_from_barcode(txis, sep = "_")
|
Arguments
txis |
SingleCellExperiment or vector with entries like FOO_BAR_AATGCT |
sep |
the separator character used to paste the column names ("_") |
Value
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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