adt_seqs_from_hdf5: dump ADT/HTO sequences from an h5 mRNA+ADT file for...
In trichelab/velocessor: The world's dumbest single-cell RNA velocity calculator and loader
Description
Usage
Arguments
Details
Value
View source: R/adt_seqs_from_hdf5.R
Description
The resulting FASTA can then be fed to Salmon, Kallisto, STAR, etc.
Usage
1
adt_seqs_from_hdf5(h5_fname, fa_fname = "ADTs.fa", base = "matrix")
Arguments
h5_fname
the h5 filename (required)
fa_fname
the fa filename to write ("ADTs.fa"; NULL elides FASTA)
base
the base name group in the h5 file ("matrix")
Details
Depending on the dataset, the base name for the features may differ from
the usual "matrix". This can be detected using rhdf5::h5ls(h5_fname).
Value
1
invisibly, a DataFrame of the ADT features and sequences
trichelab/velocessor documentation built on Jan. 5, 2022, 6:27 p.m.
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Description Usage Arguments Details Value
View source: R/adt_seqs_from_hdf5.R
Description
The resulting FASTA can then be fed to Salmon, Kallisto, STAR, etc.
Usage
1 | adt_seqs_from_hdf5(h5_fname, fa_fname = "ADTs.fa", base = "matrix")
|
Arguments
h5_fname |
the h5 filename (required) |
fa_fname |
the fa filename to write ("ADTs.fa"; NULL elides FASTA) |
base |
the base name group in the h5 file ("matrix") |
Details
Depending on the dataset, the base name for the features may differ from the usual "matrix". This can be detected using rhdf5::h5ls(h5_fname).
Value
1 | invisibly, a DataFrame of the ADT features and sequences
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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