fetch_ensembl: convenience function for fetching ENSEMBL annotations (genes...
In trichelab/velocessor: The world's dumbest single-cell RNA velocity calculator and loader
Description
Usage
Arguments
Value
Examples
View source: R/fetch_ensembl.R
Description
convenience function for fetching ENSEMBL annotations (genes & txs)
Usage
1
fetch_ensembl(version, species)
Arguments
version
the ENSEMBL version
species
the ENSEMBL species ("Homo sapiens")
Value
1
an ensdb object
Examples
1
2
3
4
fetch_ensembl("101", "Homo sapiens")
get_ensembl_transcripts("101", "Mus musculus")
get_gencode_transcripts("m24")
get_gencode_genes("gencode33")
trichelab/velocessor documentation built on Jan. 5, 2022, 6:27 p.m.
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Description Usage Arguments Value Examples
View source: R/fetch_ensembl.R
Description
convenience function for fetching ENSEMBL annotations (genes & txs)
Usage
1 | fetch_ensembl(version, species)
|
Arguments
version |
the ENSEMBL version |
species |
the ENSEMBL species ("Homo sapiens") |
Value
1 | an ensdb object
|
Examples
1 2 3 4 | fetch_ensembl("101", "Homo sapiens")
get_ensembl_transcripts("101", "Mus musculus")
get_gencode_transcripts("m24")
get_gencode_genes("gencode33")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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