dedupe_velo_txis: deduplicate symbols in a SingleCellExperiment object with...
In trichelab/velocessor: The world's dumbest single-cell RNA velocity calculator and loader
Description
Usage
Arguments
Value
View source: R/dedupe_velo_txis.R
Description
rowData(txis) must have columns 'symbol' and 'gene_id' for this to work.
Perhaps not coincidentally, this is what ensembldb returns for a given build.
To avoid potentially pointless calculations, this function first drops all
completely-zero ENSMUSG rows, then calls velocessor::find_dupe_txis, and
only works on the surviving dupes (if any).
Usage
1
dedupe_velo_txis(txis, mincount = 1, mincells = 1)
Arguments
txis
a SingleCellExperiment
mincount
minimum count to register as nonzero (1)
mincells
how many cells must have at least mincount to retain? (1)
Value
1
trichelab/velocessor documentation built on Jan. 5, 2022, 6:27 p.m.
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Description Usage Arguments Value
View source: R/dedupe_velo_txis.R
Description
rowData(txis) must have columns 'symbol' and 'gene_id' for this to work. Perhaps not coincidentally, this is what ensembldb returns for a given build. To avoid potentially pointless calculations, this function first drops all completely-zero ENSMUSG rows, then calls velocessor::find_dupe_txis, and only works on the surviving dupes (if any).
Usage
1 | dedupe_velo_txis(txis, mincount = 1, mincells = 1)
|
Arguments
txis |
a SingleCellExperiment |
mincount |
minimum count to register as nonzero (1) |
mincells |
how many cells must have at least mincount to retain? (1) |
Value
1 |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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