add_densmap: run densMAP and store the result in reducedDim(x, "DENSMAP")
In trichelab/velocessor: The world's dumbest single-cell RNA velocity calculator and loader
Description
Usage
Arguments
Value
See Also
Description
run densMAP and store the result in reducedDim(x, "DENSMAP")
Usage
1
add_densmap(x, nc = 3L, rdn = NULL, ...)
Arguments
x
a SingleCellExperiment or a slice of one
nc
how many components to keep for the densmap embedding (6)
rdn
reducedDimName to use ("HARMONY" if present, "PCA" otherwise)
...
other parameters to pass to densvis::densmap
Value
1
a SingleCellExperiment with reducedDim(x, "DENSMAP")
See Also
1
densmap
trichelab/velocessor documentation built on Jan. 5, 2022, 6:27 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value See Also
Description
run densMAP and store the result in reducedDim(x, "DENSMAP")
Usage
1 | add_densmap(x, nc = 3L, rdn = NULL, ...)
|
Arguments
x |
a SingleCellExperiment or a slice of one |
nc |
how many components to keep for the densmap embedding (6) |
rdn |
reducedDimName to use ("HARMONY" if present, "PCA" otherwise) |
... |
other parameters to pass to |
Value
1 | a SingleCellExperiment with reducedDim(x, "DENSMAP")
|
See Also
1 | densmap
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.