Files in uqrmaie1/admixtools
Inferring demographic history from genetic data
.gitignore
DESCRIPTION
Dockerfile
NAMESPACE
R/.gitignore
R/RcppExports.R
R/admixtools.R
R/fstats.R
R/io.R
R/plotting.R
R/qpadm.R
R/qpdstat.R
R/qpgraph.R
R/resampling.R
R/run_shiny_admixtools.R
R/sysdata.rda
R/toposearch.R
R/treemix_plotting_funcs.R
R/utility.R
R/wrappers.R
README.Rmd
README.md
_pkgdown.yml
data/.gitignore
data/example_anno.rda
data/example_f2_blocks.rda
data/example_f2sim1.rda
data/example_graph.rda
data/example_igraph.rda
data/example_opt.rda
data/example_qpgraph_ref_results.rda
data/example_triples.rda
docs/404.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/articles/.gitignore
docs/articles/admixtools.html
docs/articles/admixtools_files/accessible-code-block-0.0.1/empty-anchor.js
docs/articles/admixtools_files/anchor-sections-1.0/anchor-sections.css
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inst/shiny_admixtools/app.R
man/admixtools.Rd
man/afs_to_counts.Rd
man/afs_to_f2.Rd
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man/edges_to_igraph.Rd
man/eigenstrat_to_afs.Rd
man/est_to_boo.Rd
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man/example_anno.Rd
man/example_f2_blocks.Rd
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man/example_igraph.Rd
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man/f2_from_geno.Rd
man/f2_from_msprime.Rd
man/f2_from_precomp.Rd
man/f2dat_f4dat.Rd
man/f3blockdat_from_geno.Rd
man/f4_from_afdat.Rd
man/f4_from_f2.Rd
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man/generate_all_trees.Rd
man/get_block_lengths.Rd
man/get_f2.Rd
man/get_leafnames.Rd
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man/graph_to_pcs.Rd
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man/graphmod_pavel.Rd
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man/insert_admix.Rd
man/insert_admix_n.Rd
man/insert_admix_old.Rd
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man/lazadm.Rd
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man/satisfies_nonzerof4.Rd
man/satisfies_numadmix.Rd
man/satisfies_zerof4.Rd
man/shortest_unique_prefixes.Rd
man/simplify_graph.Rd
man/split_mat.Rd
man/split_multifurcations.Rd
man/spr_all.Rd
man/spr_leaves.Rd
man/summarize_descendants.Rd
man/summarize_descendants_list.Rd
man/summarize_eventorder.Rd
man/summarize_eventorder_list.Rd
man/summarize_fits.Rd
man/summarize_numadmix.Rd
man/summarize_numadmix_list.Rd
man/summarize_proxies.Rd
man/summarize_proxies_list.Rd
man/summarize_triples.Rd
man/summarize_zerof4.Rd
man/summarize_zerof4_list.Rd
man/swap_leaves.Rd
man/test_cladality.Rd
man/tree_in_graph.Rd
man/tree_neighbors.Rd
man/unidentifiable_edges.Rd
man/write_dot.Rd
man/write_f2.Rd
src/.gitignore
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/cpp_fstats.cpp
src/cpp_qpadm.cpp
src/cpp_qpgraph.cpp
src/cpp_readgeno.cpp
src/cpp_readplink.cpp
src/cpp_resampling.cpp
vignettes/.gitignore
vignettes/admixtools.Rmd
vignettes/fstats.Rmd
vignettes/graph.dot
vignettes/graphs.Rmd
vignettes/images/extract_functions.pdf
vignettes/images/extract_functions.png
vignettes/io.Rmd
vignettes/paper.Rmd
vignettes/parallel.Rmd
vignettes/plotting.Rmd
vignettes/qpadm.Rmd
vignettes/resampling.Rmd
