Files in vaulot/dvutils
A set of utilities
.Rbuildignore
.gitattributes
.gitignore
DESCRIPTION
NAMESPACE
R/bioinfo.R
R/blast.R
R/data.R
R/db.R
R/genbank.R
R/maps.R
R/metapr2.R
R/misc.R
R/oceano.R
R/phyloseq.R
R/plots.R
R/pr2_analysis.R
R/pr2_management.R
R/rcc.R
README.md
data-raw/colors.xlsx
data-raw/data_update.R
data/colors_euk_class.rda
data/colors_euk_division.rda
data/colors_euk_genus.rda
man/XStringSet_to_df.Rd
man/blast_18S_reformat.Rd
man/blast_summary.Rd
man/colors_euk_class.Rd
man/colors_euk_division.Rd
man/colors_euk_genus.Rd
man/dada2_assign.Rd
man/dada2_export.Rd
man/db_append_records.Rd
man/db_connect.Rd
man/db_connect_sqlite.Rd
man/db_disconnect.Rd
man/db_execute_query_vector.Rd
man/db_get_query.Rd
man/db_info.Rd
man/db_sql_escape.Rd
man/db_update_field_string.Rd
man/fasta_filter.Rd
man/fasta_read.Rd
man/fasta_write.Rd
man/fastq_subsample.Rd
man/file_unix2dos.Rd
man/filename_append.Rd
man/filename_change_ext.Rd
man/genbank_download.Rd
man/genbank_download_parse.Rd
man/genbank_download_parse_rentrez.Rd
man/genbank_features.Rd
man/genbank_field.Rd
man/genbank_locus.Rd
man/genbank_parse_rentrez_xml.Rd
man/genbank_search.Rd
man/genbank_taxonomy.Rd
man/get_primer_position.Rd
man/gg_bar_discrete.Rd
man/gg_boxplot.Rd
man/gg_density.Rd
man/gg_hist.Rd
man/gg_violin.Rd
man/kmer.Rd
man/kmer_set.Rd
man/lat_long_dec.Rd
man/latex_fix_bibfile.Rd
man/map_US.Rd
man/map_distribution.Rd
man/map_get_world.Rd
man/map_leaflet.Rd
man/map_world.Rd
man/map_world_google.Rd
man/map_zoom_europe.Rd
man/metapr2_export_asv.Rd
man/metapr2_export_datasets.Rd
man/metapr2_export_metadata.Rd
man/metapr2_export_qs.Rd
man/metapr2_export_reads_total.Rd
man/pcr_sequences.Rd
man/phyloseq_filter_abundant_taxa.Rd
man/phyloseq_filter_autotrophic_taxa.Rd
man/phyloseq_import_mothur.Rd
man/phyloseq_long_bargraph.Rd
man/phyloseq_long_treemap.Rd
man/phyloseq_nmds.Rd
man/phyloseq_normalize_median.Rd
man/phyloseq_normalize_percent.Rd
man/phyloseq_transform_to_long.Rd
man/pr2_buid_taxons.Rd
man/pr2_build_taxonomy.Rd
man/pr2_colors_read.Rd
man/pr2_export.Rd
man/pr2_export_all.Rd
man/pr2_export_sqlite.Rd
man/pr2_extract_one_taxo_level.Rd
man/pr2_read.Rd
man/pr2_sequence_label.Rd
man/pr2_taxo_X.Rd
man/pr2_taxo_check.Rd
man/pr2_taxo_list.Rd
man/pr2_taxo_read.Rd
man/pr2_traits_read.Rd
man/pr2_treemap.Rd
man/rcc_customers.Rd
man/rcc_export.Rd
man/rcc_genbank.Rd
man/rcc_order_details.Rd
man/rcc_orders.Rd
man/seq_reverse_complement.Rd
man/theme_dviz_grid.Rd
man/theme_dviz_hgrid.Rd
man/theme_dviz_vgrid.Rd
man/treemap_dv.Rd
man/unfill.Rd
tests/testthat.R
tests/testthat/data/OSD.xlsx
tests/testthat/data/blast_AA.summary.txt
tests/testthat/data/blast_AA.txt
tests/testthat/data/blast_small.tsv
tests/testthat/data/cell_size.xlsx
tests/testthat/data/chlorophyta.xlsx
tests/testthat/data/fastq/120p_S39_R1.fastq
tests/testthat/data/fastq/120p_S39_R1.subsample.fastq
tests/testthat/data/fastq/120p_S39_R2.fastq
tests/testthat/data/fastq/120p_S39_R2.subsample.fastq
tests/testthat/data/fastq/121p_S57_R1.fastq
tests/testthat/data/fastq/121p_S57_R1.subsample.fastq
tests/testthat/data/fastq/121p_S57_R2.fastq
tests/testthat/data/fastq/121p_S57_R2.subsample.fastq
tests/testthat/data/mothur.database
tests/testthat/data/mothur.database.aligned.fas
tests/testthat/data/mothur.database.fas
tests/testthat/data/mothur.database.rds
tests/testthat/data/mothur_samples.tsv
tests/testthat/data/otu_sequences.xlsx
tests/testthat/data/pr2_ciliates.txt
tests/testthat/data/pr2_sample.txt
tests/testthat/data/protein.faa
tests/testthat/data/taxo.txt
tests/testthat/data/taxo2.txt
tests/testthat/test-bioinfo.R
tests/testthat/test-blast.R
tests/testthat/test-db.R
tests/testthat/test-dvutils.R
tests/testthat/test-maps.R
tests/testthat/test-metapr2.R
tests/testthat/test-misc.R
tests/testthat/test-plots.R
tests/testthat/test-pr2.R
