Files in vjcitn/ontoProc
processing of ontologies of anatomy, cell lines, and so on
.Rbuildignore
.github/workflows/check-bioc.yml
.gitignore
DESCRIPTION
GRIK3table.png
NAMESPACE
NEWS
R/CLextend.R
R/CLfeats.R
R/basilisk.R
R/bind_formal_tags.R
R/bioregistry.R
R/clfixer.R
R/common_classes.R
R/connect_classes.R
R/countClasses.R
R/ctmarks.R
R/data.R
R/dropStop.R
R/fastGrep.R
R/findCommonAncestors.R
R/getOntos.R
R/get_ordo_owl_path.R
R/graphNEL.R
R/mapNaive.R
R/ontoDiff.R
R/owl2cache.R
R/owl_ops.R
R/plot.owlents.R
R/roots.R
R/setup_entities2.R
R/seurTab.R
R/shiny.R
R/subset_descendants.R
R/sym2CellOnto.R
R/termProc.R
R/treeproc.R
README.md
ctmarks.png
dashboard.png
data/PROSYM.rda
data/allGOterms.rda
data/humrna.rda
data/minicorpus.rda
data/packDesc2019.rda
data/packDesc2021.rda
data/packDesc2022.rda
data/packDesc2023.rda
data/stopWords.rda
inst/app/extcl.rda
inst/app/server.R
inst/app/ui.R
inst/extdata/hpca.csv
inst/extdata/old.tsv
inst/extdata/pbmc3k_8grp.tsv
inst/obo/PRonto.head
inst/obo/cellontobo.head
inst/obo/cellosaurusobo.head
inst/obo/chebiliteobo.head
inst/obo/cloobo.head
inst/obo/efoobo.head
inst/obo/hcaobo.head
inst/obo/oncotree.head
inst/obo/pato.obo.head
inst/ontoRda/cellOnto.rda
inst/ontoRda/co_0718.rda
inst/owl/aio.owl
inst/owl/clowl.head
inst/owl/ordo.owl.gz
inst/scripts/desc.R
inst/scripts/do.py
inst/scripts/newpl.R
inst/scripts/pokePROntoE.syms.hist.txt
ldf.png
ldfToTerm.png
man/CLfeats.Rd
man/PROSYM.Rd
man/TermSet-class.Rd
man/allGOterms.Rd
man/ancestors.Rd
man/ancestors_names.Rd
man/bind_formal_tags.Rd
man/bioregistry_ols_resources.Rd
man/c-TermSet-method.Rd
man/cellTypeToGO.Rd
man/children_names.Rd
man/cleanCLOnames.Rd
man/common_classes.Rd
man/connect_classes.Rd
man/ctmarks.Rd
man/cyclicSigset.Rd
man/demoApp.Rd
man/dropStop.Rd
man/fastGrep.Rd
man/findCommonAncestors.Rd
man/getCellOnto.Rd
man/getLeavesFromTerm.Rd
man/getOnto.Rd
man/get_classes.Rd
man/get_ordo_owl_path.Rd
man/humrna.Rd
man/improveNodes.Rd
man/labels.owlents.Rd
man/ldfToTerms.Rd
man/liberalMap.Rd
man/makeSelectInput.Rd
man/make_graphNEL_from_ontology_plot.Rd
man/map2prose.Rd
man/mapOneNaive.Rd
man/minicorpus.Rd
man/nomenCheckup.Rd
man/ontoDiff.Rd
man/onto_plot2.Rd
man/onto_roots.Rd
man/owl2cache.Rd
man/packDesc2019.Rd
man/packDesc2021.Rd
man/packDesc2022.Rd
man/packDesc2023.Rd
man/parents.Rd
man/plot.owlents.Rd
man/print.owlents.Rd
man/recognizedPredicates.Rd
man/search_labels.Rd
man/secLevGen.Rd
man/selectFromMap.Rd
man/setup_entities.Rd
man/setup_entities2.Rd
man/seur3kTab.Rd
man/siblings_TAG.Rd
man/stopWords.Rd
man/sub-.owlents.Rd
man/subclasses.Rd
man/subset_descendants.Rd
man/sym2CellOnto.Rd
man/url_ok.Rd
man/valid_ontonames.Rd
tests/test.R
tests/testthat/testAll.R
tests/testthat/testNew.R
usecaseCyclic.png
vignettes/GRIK3table.png
vignettes/ctmarks.png
vignettes/dashboard.png
vignettes/hdoasth.png
vignettes/ldf.png
vignettes/ldfToTerm.png
vignettes/ontoProc.Rmd
vignettes/ontobib.bib
vignettes/ontodiffimex.png
vignettes/owlents.Rmd
vignettes/usecaseCyclic.png
