mcmc.CalcABC: Function to calculate ABC and OFL from an MCMC dataframe

In wStockhausen/rTCSAM02: A set of tools to set up input for, and interact with output from, TCSAM02 model runs

Function to calculate ABC and OFL from an MCMC dataframe

Description

This function calculates ABC and OFL from TCSAM02 MCMC output.

Usage

mcmc.CalcABC(
  mcmc = NULL,
  dfr = NULL,
  pstar = 0.49,
  buffer = 0.2,
  doPlot = TRUE,
  xlims = NULL,
  verbose = FALSE
)

Arguments

mcmc	mcmc object
dfr	dataframe with OFL as column (and possibly 'case')
pstar	pstar value for ABC calculation
buffer	buffer for ABC as fraction (i.e., 0.20 = 20 \
doPlot	flag (T/F) to create plot
xlims	range for x-axis in plot
verbose	flag to print diagnostic info
title	title for plot

Details

uses plotABC to produce ABC plots for each case

Value

list with elements

• dfrABCs - dataframe with median results, ABC.pstar and ABC.buffer for each case

• dfrOFLs - dataframe with empirical cdf of OFL for each case

• plot - ggplot2 object

wStockhausen/rTCSAM02 documentation built on April 16, 2024, 6:25 a.m.