wStockhausen/rTCSAM2015
A set of tools to set up input for, and interact with output from, a TCSAM2015 model run, as well as to compare TCSAM2015 and rsimTCSAM runs.

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148
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wStockhausen/rTCSAM2015: A set of tools to set up input for, and interact with output from, a TCSAM2015 model run, as well as to compare TCSAM2015 and rsimTCSAM runs.
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API

API for wStockhausen/rTCSAM2015
A set of tools to set up input for, and interact with output from, a TCSAM2015 model run, as well as to compare TCSAM2015 and rsimTCSAM runs.

Global functions
appendString Man page Source code
calcLogPrior Man page Source code
checkHandlingMortalityConsistency Man page Source code
compareModels Man page Source code
compareModels.FisheryCatches Man page Source code
compareModels.FisheryResults Man page Source code
compareModels.FisherySelFcns Man page Source code
compareModels.FisheryYields Man page Source code
compareModels.FishingRates Man page Source code
compareModels.Fits.AggCatchData Man page Source code
compareModels.Fits.NatZData Man page Source code
compareModels.GrowthTransitionMatrices Man page Source code
compareModels.ObjFunValues Man page Source code
compareModels.ParamEsts Man page Source code
compareModels.PopProcesses Man page Source code
compareModels.PopQuants Man page Source code
compareModels.SelFcns.ByPC Man page Source code
compareModels.SurveyAbundance Man page Source code
compareModels.SurveyBiomass Man page Source code
compareModels.SurveyQs Man page Source code
compareModels.SurveyResults Man page Source code
compareModels.SurveySelFcns Man page Source code
compareModels.ZScores.AggCatchData Man page Source code
compareModels.ZScores.NatZData Man page Source code
compileMCMCResults Man page Source code
extractModelResults.Params Man page Source code
extractModelResults.ParamsPlusStdDevs Man page Source code
extractModelResults.RepObjs Man page Source code
extractModelResults.StdDevs Man page Source code
getInputDataTimeframes Man page Source code
getIntervalLimits Man page Source code
getMCMCFile Man page Source code
getMCMCResults Man page Source code
getMDFR Man page Source code
getMDFR.FitsForABData Man page Source code
getMDFR.FitsForFleets Man page Source code
getMDFR.FitsForSizeComps Man page Source code
getMDFR.GrowthTransitionMatrices Man page Source code
getMDFR.MeanGrowthIncrements Man page Source code
getMDFR.NatMort Man page Source code
getMDFR.RecSizeDistribution Man page Source code
getMDFR.SexRatio Man page Source code
getMDFR.ZScoresForABData Man page Source code
getMDFR.ZScoresForCatchData Man page Source code
getMDFR.ZScoresForFleets Man page Source code
getMDFR.ZScoresForSizeComps Man page Source code
getMDFR.prM2M Man page Source code
getObj Man page Source code
getObjFunValues.AggregateCatch Man page Source code
getObjFunValues.CatchData Man page Source code
getObjFunValues.Components Man page Source code
getObjFunValues.Data Man page Source code
getObjFunValues.Fleets Man page Source code
getObjFunValues.NatZ Man page Source code
getObjFunValues.Penalties Man page Source code
getObjFunValues.Priors Man page Source code
getPlotSymbology Man page Source code
getPrs Man page Source code
getRep Man page Source code
getRunCommands Man page Source code
getStd Man page Source code
plot.xy Man page
plotAggregateCatchData Man page Source code
plotAggregateCatchDataGG Man page Source code
plotBars Man page Source code
plotCatchData Man page Source code
plotCompsAsCircles Man page Source code
plotCompsAsCirclesGG Man page Source code
plotDataModelComparisons Man page Source code
plotEffNsForSizeFreqs Man page Source code
plotEffNsGG Man page Source code
plotEffortRegressions Man page Source code
plotErrorBars.H Man page Source code
plotErrorBars.V Man page Source code
plotExploitationRatesGG Man page Source code
plotFisheriesResults Man page Source code
plotFisheryCatchesGG Man page Source code
plotFisheryYieldsGG Man page Source code
plotFishingRatesGG Man page Source code
plotFitsGG.MeanSizeComps Man page Source code
plotFitsGG.SizeComps Man page Source code
plotInputDataTimeframes Man page Source code
plotMCMCDensity Man page Source code
plotMCMCResults Man page Source code
plotMCMCResults.forArray3D Man page Source code
plotMCMCResults.forMatrix Man page Source code
plotMCMCResults.forVector Man page Source code
plotMDFR.BarLine Man page Source code
plotMDFR.Bars Man page Source code
plotMDFR.Bubbles Man page Source code
plotMDFR.XY Man page Source code
plotMatrix Man page Source code
plotMeanSizeComps Man page Source code
plotMeanSizeCompsGG Man page Source code
plotModelResults.ScalarParams Man page Source code
plotMulti.GG Man page Source code
plotNM.ByPC Man page Source code
plotNatZ Man page Source code
plotObjFunValues.Data Man page Source code
plotObjFunValues.Penalties Man page Source code
plotObjFunValues.Priors Man page Source code Source code
plotPDFRects Man page Source code
plotParameters Man page Source code
plotParameters.DevsVectorVector Man page Source code
plotParameters.NumberVector Man page Source code
plotParameters.VectorVector Man page Source code
plotPopComponents.Abundance Man page Source code
plotPopComponents.Biomass Man page Source code
plotPopQuants Man page Source code
plotPrGrowth.ByPC Man page Source code
plotPrMaturity.ByPC Man page Source code
plotRecruits Man page Source code
plotRecruits.SexRatio Man page Source code
plotSelFcns.ByYear Man page Source code
plotSizeCompsComparisons0 Man page Source code
plotSizeCompsComparisons1 Man page Source code
plotSizeCompsComparisons2 Man page Source code
plotSizeCompsGG.Single Man page Source code
plotSpB Man page Source code
plotTCSAM2015 Man page Source code
plotTCSAM2015I Man page Source code
plotTCSAM2015J Man page Source code
plotXY Man page Source code
plotZScores Man page Source code
plotZScoresForAll Man page Source code
plotZScoresForCatchData Man page Source code
plotZScoresForFisheries Man page Source code
plotZScoresForFleets Man page Source code
plotZScoresForSizeFreqs Man page Source code
plotZScoresForSurveys Man page Source code
plotZScoresGG Man page Source code
plotZScoresGG.SizeFreqs Man page Source code
plotZScoresGG1.SizeFreqs Man page Source code
readParFile Man page Source code
readParamsCSV Man page Source code
readReportFile Man page Source code
readStdFile Man page Source code
reformatTimeBlocks Man page Source code
removeImmOS Man page Source code
runJitter Man page Source code
runProfiles Man page Source code
runSequence Man page Source code
runTCSAM2015 Man page Source code
selectReportFile Man page Source code
sumByDims Man page Source code
writeModelResultsToCSV.Fisheries Man page Source code
writeModelResultsToCSV.FisherySelFcns Man page Source code
writeModelResultsToCSV.ObjFunValues Man page Source code
writeModelResultsToCSV.ParamEsts Man page Source code
writeModelResultsToCSV.PopProcesses Man page Source code
writeModelResultsToCSV.PopQuants Man page Source code
writeModelResultsToCSV.SurveySelFcns Man page Source code
writeModelResultsToCSV.Surveys Man page Source code
wStockhausen/rTCSAM2015 documentation built on May 3, 2019, 7:14 p.m.

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