In wguo-research/scCancer: A package for automated processing of single cell RNA-seq data in cancer

• The number of droplets containing UMI (nUMI > 0) is r results$nList[1].

cat("* Using the supplied cell calling results(filtered data), `", results$nList[2], "` cells are identified (min.nUMI = `", results$min.nUMI, "`).\n", sep = "")

cat("* Cell calling result(fitered data) cannot be found, so we use the R package [`DropletUtils`](https://bioconductor.org/packages/release/bioc/html/DropletUtils.html)` to identify cell.\n")
cat("* After cell calling, `", results$nList[2], "` cells are identified (min.nUMI = `", results$min.nUMI, "`).\n", sep = "")

• Following are two plots showing the distribution of nUMI for cells and empty droplets identified.

plot_grid(results$p.cells.1, results$p.cells.2, ncol = 2)

(Hi-res image: left, right)

wguo-research/scCancer documentation built on May 26, 2024, 9:12 p.m.