In wguo-research/scCancer: A package for automated processing of single cell RNA-seq data in cancer

r h.i.r h.ii Differential expression analysis

In order to extract the features of each cluster, we perform differentially expression analysis by running Seurat functions.

Here is a heatmap plot showing the top r results$n.markers differentially expressed genes for every cluster compared to all remaining cells. All information of differentially expressed genes can be found here.

results$seurat.plots$p.de.heatmap

(Hi-res image: view)

h.ii <- h.ii + 1

wguo-research/scCancer documentation built on May 26, 2024, 9:12 p.m.