Multi-sample single cell deconvolution

Abs_diff_multi | Plot heatmap of Absolute difference between estimated and... |

Anova_info | ANOVA Test for each gene |

Boxplot_Est | Boxplot of estimated cell type proportions |

bulk_construct | Construct artificial bulk tissue expression from single cell... |

CellTotal.df | Compare cell type specific total expression (library size)... |

Est_sim | Estimate cell type proportions by different methods and... |

Eval_multi | Evaluate estimation methods |

fpkmToTpm | Calculate fpkm to tpm |

get_upper_tri | Get upper triangle matrix |

Jitter_Est | Jitter plot of estimated cell type proportions |

music.basic | Estimate cell type proportion with MuSiC and NNLS |

music.basic.ct | Estimate cell type proportion with MuSiC and NNLS |

music_basis | Prepare Design matrix and Cross-sample Variance for MuSiC... |

music_Design.matrix | Cell type specific library size |

music.iter | Scaling bulk data and signature matrix and estimate cell type... |

music.iter.ct | Scaling bulk data and signature matrix and estimate cell type... |

music_M.theta | Cross-sample Mean of Relative Abudance |

music_prop | MuSiC Deconvolution |

music_prop.cluster | MuSiC Deconvolution with Clusters |

music_S | Cell type specific library size |

music_Sigma | Cross-sample Varirance of Relative Abudance |

music_Sigma.ct | Cross-sample Corvriance of Relative Abudance |

music_Theta | Sample and cell type specific relative abudance |

my.log | log transformation with regulation |

my.rowMeans | Calcuate Row Means with NA remove |

my.sqrt | Calculate square root of all values |

plotCellTotal.two | Plot the cell type specific library size of 2 single cell... |

Prop_comp_multi | Plot heatmap of real and estimated cell type proportions |

Prop_convert | Convert list of real and estimated cell type proportions to... |

Prop_heat_Est | Heatmap of estimated cell type proportions |

relative.ab | Calculate relative abudance |

Relative_gene_boxplot | Boxplot of relative abundance |

Scatter_multi | Plot Scatter plot of real and estimated cell type proportions |

Twocelltype.Generator | Simulate Single cell read counts |

Weight_cal | Calculate weight with cross-subject variance for each cell... |

weight.cal.ct | Calculate weight with cross cell type covariance |

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