Man pages for xuranw/MuSiC
Multi-sample single cell deconvolution

Abs_diff_multiPlot heatmap of Absolute difference between estimated and...
Anova_infoANOVA Test for each gene
Boxplot_EstBoxplot of estimated cell type proportions
bulk_constructConstruct artificial bulk tissue expression from single cell...
CellTotal.dfCompare cell type specific total expression (library size)...
Est_simEstimate cell type proportions by different methods and...
Eval_multiEvaluate estimation methods
fpkmToTpmCalculate fpkm to tpm
get_upper_triGet upper triangle matrix
Jitter_EstJitter plot of estimated cell type proportions
music.basicEstimate cell type proportion with MuSiC and NNLS
music.basic.ctEstimate cell type proportion with MuSiC and NNLS
music_basisPrepare Design matrix and Cross-sample Variance for MuSiC...
music_Design.matrixCell type specific library size
music.iterScaling bulk data and signature matrix and estimate cell type...
music.iter.ctScaling bulk data and signature matrix and estimate cell type...
music_M.thetaCross-sample Mean of Relative Abudance
music_propMuSiC Deconvolution
music_prop.clusterMuSiC Deconvolution with Clusters
music_SCell type specific library size
music_SigmaCross-sample Varirance of Relative Abudance
music_Sigma.ctCross-sample Corvriance of Relative Abudance
music_ThetaSample and cell type specific relative abudance
my.loglog transformation with regulation
my.rowMeansCalcuate Row Means with NA remove
my.sqrtCalculate square root of all values
plotCellTotal.twoPlot the cell type specific library size of 2 single cell...
Prop_comp_multiPlot heatmap of real and estimated cell type proportions
Prop_convertConvert list of real and estimated cell type proportions to...
Prop_heat_EstHeatmap of estimated cell type proportions
relative.abCalculate relative abudance
Relative_gene_boxplotBoxplot of relative abundance
Scatter_multiPlot Scatter plot of real and estimated cell type proportions
Twocelltype.GeneratorSimulate Single cell read counts
Weight_calCalculate weight with cross-subject variance for each cell...
weight.cal.ctCalculate weight with cross cell type covariance
xuranw/MuSiC documentation built on Aug. 15, 2018, 3:37 a.m.