bulk_construct: Construct artificial bulk tissue expression from single cell...
In xuranw/MuSiC: Multi-subject single cell deconvolution
bulk_construct R Documentation
Construct artificial bulk tissue expression from single cell data
Description
Artificial bulk tissue expression is generated by adding gene expressions of all cells from
same subjects.
Usage
bulk_construct(sce, clusters, samples, select.ct = NULL)
Arguments
sce
SingleCellExperiment, single cell dataset
clusters
character, the colData used as clusters
samples
character, the colData used as samples
select.ct
vector of cell types included, default as NULL. If NULL, include all cell types in x.
Otherwise, only cells of selected cell types will be used for construction.
Value
Matrix of expression of constructed bulk tissue, matrix of cell number in each cluster by sample
xuranw/MuSiC documentation built on March 7, 2024, 11:45 a.m.
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| bulk_construct | R Documentation |
Construct artificial bulk tissue expression from single cell data
Description
Artificial bulk tissue expression is generated by adding gene expressions of all cells from same subjects.
Usage
bulk_construct(sce, clusters, samples, select.ct = NULL)
Arguments
sce |
SingleCellExperiment, single cell dataset |
clusters |
character, the colData used as clusters |
samples |
character, the colData used as samples |
select.ct |
vector of cell types included, default as |
Value
Matrix of expression of constructed bulk tissue, matrix of cell number in each cluster by sample
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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