music_Sigma.ct: Cross-subject Covariance of Relative Abundance

In xuranw/MuSiC: Multi-subject single cell deconvolution

Cross-subject Covariance of Relative Abundance

Description

This function is for calculating the cross-subject covariance of relative abundance for selected cell types.

Usage

music_Sigma.ct(x, non.zero, markers, clusters, samples, select.ct)

Arguments

x	SingleCellExperiment, single cell dataset
non.zero	logical, if true, remove all gene with zero expression
markers	vector or list of gene names
clusters	character, the ColData used as clusters
samples	character,the ColData used as samples
select.ct	vector of cell types included, default as NULL. If NULL, include all cell types in x

Value

celltype^2 by gene matrix of covariance

xuranw/MuSiC documentation built on March 7, 2024, 11:45 a.m.