music_Theta: Subject and cell type specific relative abundance

In xuranw/MuSiC: Multi-subject single cell deconvolution

Subject and cell type specific relative abundance

Description

This function is for calculating the subject and cell type specific relative abundance for selected cell types.

Usage

music_Theta(x, non.zero = FALSE, clusters, samples, select.ct = NULL)

Arguments

x	SingleCellExperiment, single cell dataset
non.zero	logical, default as F. If true, remove all gene with zero expression
clusters	character, the colData used as clusters
samples	character,the colData used as samples
select.ct	vector of cell types included, default as NULL. If NULL, include all cell types in x
markers	vector or list of gene names

Value

gene*subject by cell type matrix of relative abundance

xuranw/MuSiC documentation built on March 7, 2024, 11:45 a.m.