music_Design.matrix: Cell type specific library size

In xuranw/MuSiC: Multi-subject single cell deconvolution

Cell type specific library size

Description

This function is for calculating the cell type specific library size for selected cell types.

Usage

music_Design.matrix(x, non.zero, markers, clusters, samples, select.ct)

Arguments

x	SingleCellExperiment, single cell dataset
non.zero	logical, if true, remove all gene with zero expression
markers	vector or list of gene names
clusters	character, the colData used as clusters
samples	character,the colData used as samples
select.ct	vector of cell types included, default as NULL. If NULL, include all cell types in x

Value

subject by cell type matrix of library

See Also

music_S, music_M.theta,

xuranw/MuSiC documentation built on March 7, 2024, 11:45 a.m.