Eval_multi: Evaluate estimation methods

Description Usage Arguments Value

Description

Calculate Pearson correlation, RMSE and mAD between real and estimated cell type proportions

Usage

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Eval_multi(prop.real, prop.est, method.name = NULL, by.subject = FALSE,
  select.ct = NULL, ...)

Arguments

prop.real

a matrix of real cell type proportions

prop.est

a matrix or a list of matrices of estimated cell type proportions

method.name

vector of the names of estmation methods. Default is NULL and the names will be generated automatically as 'Est1', 'Est2', ...

by.subject

logical, default is FALSE. If TRUE, Pearson correlation is estimated subject by subject.

select.ct

a vector of cell types selected for evaluation. Default is NULL. If select.ct is NULL, we evaluate real and estimated cell type proportion with all common cell types. Otherwise use only selected cell types.

Value

a matrix of evaluation


xuranw/MuSiC documentation built on May 7, 2019, 9:40 a.m.