Relative_gene_boxplot: Boxplot of relative abundance

In xuranw/MuSiC: Multi-subject single cell deconvolution

Boxplot of relative abundance

Description

Generate boxplot of cell type specific relative abundance for each subjects

Usage

Relative_gene_boxplot(
  sc.sce,
  gene.name,
  nu = 10^{
     -10
 },
  marker.id = NULL,
  log.trans = TRUE,
  select.ct = NULL,
  ...
)

Arguments

sc.sce	ExpressionSet for single cell data
gene.name	character, for gene name
nu	numeric regulator for log transformation
marker.id	numeric indicator of cell type marker genes. Order in the select cell types. Default is NULL. If NULL, do not print out the cell type.
log.trans	logical, default as TRUE. If FALSE, do not take log transformation of relative abundance.
select.ct	vector of characters. Default is NULL. If NULL use all cell types provided. Otherwise select cell types provided.

Value

a 'ggplot' object with [ggplot2::geom_boxplot]

xuranw/MuSiC documentation built on March 7, 2024, 11:45 a.m.