music_M.theta | R Documentation |
This function is for calculating the cross-subject mean of relative abundance for selected cell types.
music_M.theta(x, non.zero, markers, clusters, samples, select.ct)
x |
SingleCellExperiment, single cell dataset |
non.zero |
logical, if true, remove all gene with zero expression |
markers |
vector or list of gene names |
clusters |
character, the phenoData used as clusters |
samples |
character,the phenoData used as samples |
select.ct |
vector of cell types included, default as |
gene by cell type matrix of average relative abundance
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