music_M.theta: Cross-subject Mean of Relative Abudance

In xuranw/MuSiC: Multi-subject single cell deconvolution

Cross-subject Mean of Relative Abudance

Description

This function is for calculating the cross-subject mean of relative abundance for selected cell types.

Usage

music_M.theta(x, non.zero, markers, clusters, samples, select.ct)

Arguments

x	SingleCellExperiment, single cell dataset
non.zero	logical, if true, remove all gene with zero expression
markers	vector or list of gene names
clusters	character, the phenoData used as clusters
samples	character,the phenoData used as samples
select.ct	vector of cell types included, default as NULL. If NULL, include all cell types in x

Value

gene by cell type matrix of average relative abundance

xuranw/MuSiC documentation built on March 7, 2024, 11:45 a.m.