Files in ys-amms/bionexr

Integrative network-based analysis of cancer somatic mutation and expression data

.gitattributes

.gitignore

DESCRIPTION

NAMESPACE

R/analysis.R R/ext.R R/firehose_downloader.R R/io.R R/main_pathway.R R/main_ppi.R R/mutation_module.R R/pathway_module.R R/plot_pathway.R R/plot_ppi.R R/ppi_module.R

R/sysdata.rda

R/utils.R README.md

data/hnsc_exp_part.rda

data/hnsc_expressed_genes.rda

data/hnsc_mut_part.rda

fig/f1.png

fig/f2.png

fig/overview.jpg

man/firehose_get.Rd man/hnsc_exp_part.Rd man/hnsc_expressed_genes.Rd man/hnsc_mut_part.Rd man/identify_expressed_genes.Rd man/list_cohorts.Rd man/list_run_types.Rd man/list_runs.Rd man/network_from_ppi.Rd man/network_from_significant_branches.Rd man/perform_gene_pathway.Rd man/perform_gene_ppi.Rd man/perform_main_pathway.Rd man/perform_main_ppi.Rd man/perform_network_pathway.Rd man/perform_network_ppi.Rd man/plot_pathway.Rd man/plot_ppi.Rd man/prepare_ma.Rd vignettes/vignette.Rmd

vignettes/vignette.html

ys-amms/bionexr documentation built on May 4, 2019, 5:33 p.m.