hnsc_exp_part: Example data
In ys-amms/bionexr: Integrative network-based analysis of cancer somatic mutation and expression data
Description
Example data
Usage
1
Format
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'data.frame': 795 obs. of 305 variables:
$ TCGA-BA-4074-01: num 476 32 69 10 20 ...
$ TCGA-BA-4076-01: num 183 6 69 2 15 ...
$ TCGA-BA-4077-01: num 153 55 196 25 94 127 21 208 102 183 ...
$ TCGA-BA-4078-01: num 448 15 1294 3 471 ...
$ TCGA-BA-5149-01: num 157 3 54 0 451 ...
$ TCGA-BA-5151-01: num 74.2 17 238 0 474 15 114 2 234 10 ...
$ TCGA-BA-5152-01: num 119 46 293 25 308 28 83 2 218 2 ...
$ TCGA-BA-5153-01: num 154 36 1285 0 73 ...
$ TCGA-BA-5555-01: num 82 24 455 4 337 ...
$ TCGA-BA-5556-01: num 124 20 150 0 82 ...
$ TCGA-BA-5557-01: num 184 13 72 0 574 38 91 76 676 40 ...
$ TCGA-BA-5558-01: num 72 7 115 0 281 27 11 8 484 2 ...
$ TCGA-BA-5559-01: num 265 51 2557 36 213 ...
$ TCGA-BA-6868-01: num 37.2 31 119 11 757 ...
$ TCGA-BA-6869-01: num 361 29 296 3 44 ...
$ TCGA-BA-6870-01: num 186 11 160 2 109 ...
$ TCGA-BA-6871-01: num 203 57 773 25 169 ...
$ TCGA-BA-6872-01: num 126 5 108 0 138 ...
$ TCGA-BA-6873-01: num 43 3 141 0 29 60 33 741 46 609 ...
$ TCGA-BA-7269-01: num 584 21 120 3 189 80 98 2040 586 381 ...
$ TCGA-BB-4217-01: num 197 24 473 2 7 ...
$ TCGA-BB-4223-01: num 90 10 1050 4 39 89 24 4 631 1 ...
$ TCGA-BB-4224-01: num 228 20 368 10 52 ...
$ TCGA-BB-4225-01: num 78.5 30 537 0 202 ...
$ TCGA-BB-4228-01: num 207 9 958 1 105 ...
$ TCGA-CN-4723-01: num 219 25 554 8 582 ...
$ TCGA-CN-4725-01: num 24 2 260 39 104 ...
$ TCGA-CN-4726-01: num 50 6 29 0 385 12 15 914 519 127 ...
$ TCGA-CN-4727-01: num 139 4 42 0 468 ...
$ TCGA-CN-4728-01: num 391 25 434 6 943 ...
$ TCGA-CN-4729-01: num 62 8 158 2 311 83 21 9 88 1 ...
$ TCGA-CN-4730-01: num 134 9 106 3 47 6 9 15 157 6 ...
$ TCGA-CN-4731-01: num 125 41 60 1 80 50 57 5 117 3 ...
$ TCGA-CN-4733-01: num 102 5 396 3 139 ...
$ TCGA-CN-4735-01: num 412 73 813 8 85 ...
$ TCGA-CN-4736-01: num 83 14 771 44 317 ...
$ TCGA-CN-4737-01: num 59.9 14 658 27 384 ...
$ TCGA-CN-4738-01: num 45 116 332 23 50 105 78 10 433 5 ...
$ TCGA-CN-4739-01: num 102 38 396 3 55 132 43 188 406 49 ...
$ TCGA-CN-4740-01: num 129 30 660 34 475 ...
$ TCGA-CN-4741-01: num 67 73 840 70 101 ...
$ TCGA-CN-4742-01: num 85 11 140 3 80 ...
$ TCGA-CN-5355-01: num 69 16 299 20 331 ...
$ TCGA-CN-5356-01: num 462 9 554 3 473 ...
$ TCGA-CN-5359-01: num 118 38 527 6 988 ...
$ TCGA-CN-5360-01: num 104 149 1009 54 85 ...
$ TCGA-CN-5363-01: num 72 0 111 0 189 ...
$ TCGA-CN-5364-01: num 61 9 301 6 31 ...
$ TCGA-CN-5365-01: num 155 11 42 1 62 ...
$ TCGA-CN-5366-01: num 75.8 11 221 4 159 ...
$ TCGA-CN-5367-01: num 66.4 17 198 10 130 ...
$ TCGA-CN-5369-01: num 123 21 179 3 153 ...
$ TCGA-CN-5370-01: num 68.2 138 578 32 571 ...
$ TCGA-CN-5373-01: num 63 3 260 1 206 134 20 976 93 611 ...
$ TCGA-CN-5374-01: num 309 13 767 42 18 ...
$ TCGA-CN-6010-01: num 79.8 90 562 50 70 ...
$ TCGA-CN-6011-01: num 300 1 40 2 878 ...
$ TCGA-CN-6012-01: num 190 18 633 25 139 ...
$ TCGA-CN-6013-01: num 74 4 253 4 21 ...
$ TCGA-CN-6016-01: num 252 4 610 31 122 ...
$ TCGA-CN-6018-01: num 76 11 318 5 468 ...
$ TCGA-CN-6019-01: num 240 40 607 26 226 ...
$ TCGA-CN-6020-01: num 77 12 97 1 84 ...
$ TCGA-CN-6021-01: num 54.8 18 262 3 54 ...
$ TCGA-CN-6022-01: num 209 17 546 20 120 ...
$ TCGA-CN-6023-01: num 136 95 865 49 133 ...
$ TCGA-CN-6024-01: num 162 32 284 8 77 ...
$ TCGA-CN-6988-01: num 37 10 250 3 106 328 10 106 297 67 ...
$ TCGA-CN-6989-01: num 235 35 561 11 539 ...
$ TCGA-CN-6992-01: num 51.5 32 1119 136 280 ...
$ TCGA-CN-6994-01: num 95.9 24 127 0 279 ...
$ TCGA-CN-6995-01: num 46.9 5 184 1 30 ...
$ TCGA-CN-6997-01: num 38.1 23 438 4 128 ...
$ TCGA-CN-6998-01: num 127 5 48 18 7 ...
$ TCGA-CQ-5323-01: num 51.9 10 410 1 119 ...
$ TCGA-CQ-5324-01: num 30 17 41 0 127 11 56 58 86 14 ...
$ TCGA-CQ-5325-01: num 74 3 255 5 103 ...
$ TCGA-CQ-5326-01: num 48 10 257 0 296 25 125 55 89 0 ...
$ TCGA-CQ-5329-01: num 245 4 170 3 53 ...
$ TCGA-CQ-5330-01: num 44.8 1 326 10 144 ...
$ TCGA-CQ-5331-01: num 287 6 217 2 791 ...
$ TCGA-CQ-5332-01: num 129 19 475 10 285 33 24 11 89 2 ...
$ TCGA-CQ-5334-01: num 57 1 103 0 402 16 12 93 724 27 ...
$ TCGA-CQ-6218-01: num 45 15 109 1 307 51 28 22 273 3 ...
$ TCGA-CQ-6220-01: num 91 4 109 0 112 11 26 334 18 51 ...
$ TCGA-CQ-6221-01: num 1192 79 428 6 343 ...
$ TCGA-CQ-6223-01: num 82 7 143 3 20 40 6 8 14 0 ...
$ TCGA-CQ-6224-01: num 148 7 703 25 130 ...
$ TCGA-CQ-6225-01: num 64 26 161 6 26 ...
$ TCGA-CQ-6228-01: num 192 25 450 24 30 ...
$ TCGA-CQ-6229-01: num 33.1 9 312 16 57 ...
$ TCGA-CQ-7065-01: num 19 4 46 5 80 ...
$ TCGA-CQ-7068-01: num 86.1 5 86 0 55 ...
$ TCGA-CR-5243-01: num 95.6 4 1561 2 426 ...
$ TCGA-CR-5247-01: num 98 6 79 0 41 ...
$ TCGA-CR-5248-01: num 218 8 795 0 5 111 28 6 33 3 ...
$ TCGA-CR-5250-01: num 194 6 991 0 150 ...
$ TCGA-CR-6470-01: num 267 97 943 34 292 ...
$ TCGA-CR-6471-01: num 63.2 3 371 3 135 ...
[list output truncated]
ys-amms/bionexr documentation built on May 4, 2019, 5:33 p.m.
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Description
Example data
Usage
1 |
Format
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 | 'data.frame': 795 obs. of 305 variables:
$ TCGA-BA-4074-01: num 476 32 69 10 20 ...
$ TCGA-BA-4076-01: num 183 6 69 2 15 ...
$ TCGA-BA-4077-01: num 153 55 196 25 94 127 21 208 102 183 ...
$ TCGA-BA-4078-01: num 448 15 1294 3 471 ...
$ TCGA-BA-5149-01: num 157 3 54 0 451 ...
$ TCGA-BA-5151-01: num 74.2 17 238 0 474 15 114 2 234 10 ...
$ TCGA-BA-5152-01: num 119 46 293 25 308 28 83 2 218 2 ...
$ TCGA-BA-5153-01: num 154 36 1285 0 73 ...
$ TCGA-BA-5555-01: num 82 24 455 4 337 ...
$ TCGA-BA-5556-01: num 124 20 150 0 82 ...
$ TCGA-BA-5557-01: num 184 13 72 0 574 38 91 76 676 40 ...
$ TCGA-BA-5558-01: num 72 7 115 0 281 27 11 8 484 2 ...
$ TCGA-BA-5559-01: num 265 51 2557 36 213 ...
$ TCGA-BA-6868-01: num 37.2 31 119 11 757 ...
$ TCGA-BA-6869-01: num 361 29 296 3 44 ...
$ TCGA-BA-6870-01: num 186 11 160 2 109 ...
$ TCGA-BA-6871-01: num 203 57 773 25 169 ...
$ TCGA-BA-6872-01: num 126 5 108 0 138 ...
$ TCGA-BA-6873-01: num 43 3 141 0 29 60 33 741 46 609 ...
$ TCGA-BA-7269-01: num 584 21 120 3 189 80 98 2040 586 381 ...
$ TCGA-BB-4217-01: num 197 24 473 2 7 ...
$ TCGA-BB-4223-01: num 90 10 1050 4 39 89 24 4 631 1 ...
$ TCGA-BB-4224-01: num 228 20 368 10 52 ...
$ TCGA-BB-4225-01: num 78.5 30 537 0 202 ...
$ TCGA-BB-4228-01: num 207 9 958 1 105 ...
$ TCGA-CN-4723-01: num 219 25 554 8 582 ...
$ TCGA-CN-4725-01: num 24 2 260 39 104 ...
$ TCGA-CN-4726-01: num 50 6 29 0 385 12 15 914 519 127 ...
$ TCGA-CN-4727-01: num 139 4 42 0 468 ...
$ TCGA-CN-4728-01: num 391 25 434 6 943 ...
$ TCGA-CN-4729-01: num 62 8 158 2 311 83 21 9 88 1 ...
$ TCGA-CN-4730-01: num 134 9 106 3 47 6 9 15 157 6 ...
$ TCGA-CN-4731-01: num 125 41 60 1 80 50 57 5 117 3 ...
$ TCGA-CN-4733-01: num 102 5 396 3 139 ...
$ TCGA-CN-4735-01: num 412 73 813 8 85 ...
$ TCGA-CN-4736-01: num 83 14 771 44 317 ...
$ TCGA-CN-4737-01: num 59.9 14 658 27 384 ...
$ TCGA-CN-4738-01: num 45 116 332 23 50 105 78 10 433 5 ...
$ TCGA-CN-4739-01: num 102 38 396 3 55 132 43 188 406 49 ...
$ TCGA-CN-4740-01: num 129 30 660 34 475 ...
$ TCGA-CN-4741-01: num 67 73 840 70 101 ...
$ TCGA-CN-4742-01: num 85 11 140 3 80 ...
$ TCGA-CN-5355-01: num 69 16 299 20 331 ...
$ TCGA-CN-5356-01: num 462 9 554 3 473 ...
$ TCGA-CN-5359-01: num 118 38 527 6 988 ...
$ TCGA-CN-5360-01: num 104 149 1009 54 85 ...
$ TCGA-CN-5363-01: num 72 0 111 0 189 ...
$ TCGA-CN-5364-01: num 61 9 301 6 31 ...
$ TCGA-CN-5365-01: num 155 11 42 1 62 ...
$ TCGA-CN-5366-01: num 75.8 11 221 4 159 ...
$ TCGA-CN-5367-01: num 66.4 17 198 10 130 ...
$ TCGA-CN-5369-01: num 123 21 179 3 153 ...
$ TCGA-CN-5370-01: num 68.2 138 578 32 571 ...
$ TCGA-CN-5373-01: num 63 3 260 1 206 134 20 976 93 611 ...
$ TCGA-CN-5374-01: num 309 13 767 42 18 ...
$ TCGA-CN-6010-01: num 79.8 90 562 50 70 ...
$ TCGA-CN-6011-01: num 300 1 40 2 878 ...
$ TCGA-CN-6012-01: num 190 18 633 25 139 ...
$ TCGA-CN-6013-01: num 74 4 253 4 21 ...
$ TCGA-CN-6016-01: num 252 4 610 31 122 ...
$ TCGA-CN-6018-01: num 76 11 318 5 468 ...
$ TCGA-CN-6019-01: num 240 40 607 26 226 ...
$ TCGA-CN-6020-01: num 77 12 97 1 84 ...
$ TCGA-CN-6021-01: num 54.8 18 262 3 54 ...
$ TCGA-CN-6022-01: num 209 17 546 20 120 ...
$ TCGA-CN-6023-01: num 136 95 865 49 133 ...
$ TCGA-CN-6024-01: num 162 32 284 8 77 ...
$ TCGA-CN-6988-01: num 37 10 250 3 106 328 10 106 297 67 ...
$ TCGA-CN-6989-01: num 235 35 561 11 539 ...
$ TCGA-CN-6992-01: num 51.5 32 1119 136 280 ...
$ TCGA-CN-6994-01: num 95.9 24 127 0 279 ...
$ TCGA-CN-6995-01: num 46.9 5 184 1 30 ...
$ TCGA-CN-6997-01: num 38.1 23 438 4 128 ...
$ TCGA-CN-6998-01: num 127 5 48 18 7 ...
$ TCGA-CQ-5323-01: num 51.9 10 410 1 119 ...
$ TCGA-CQ-5324-01: num 30 17 41 0 127 11 56 58 86 14 ...
$ TCGA-CQ-5325-01: num 74 3 255 5 103 ...
$ TCGA-CQ-5326-01: num 48 10 257 0 296 25 125 55 89 0 ...
$ TCGA-CQ-5329-01: num 245 4 170 3 53 ...
$ TCGA-CQ-5330-01: num 44.8 1 326 10 144 ...
$ TCGA-CQ-5331-01: num 287 6 217 2 791 ...
$ TCGA-CQ-5332-01: num 129 19 475 10 285 33 24 11 89 2 ...
$ TCGA-CQ-5334-01: num 57 1 103 0 402 16 12 93 724 27 ...
$ TCGA-CQ-6218-01: num 45 15 109 1 307 51 28 22 273 3 ...
$ TCGA-CQ-6220-01: num 91 4 109 0 112 11 26 334 18 51 ...
$ TCGA-CQ-6221-01: num 1192 79 428 6 343 ...
$ TCGA-CQ-6223-01: num 82 7 143 3 20 40 6 8 14 0 ...
$ TCGA-CQ-6224-01: num 148 7 703 25 130 ...
$ TCGA-CQ-6225-01: num 64 26 161 6 26 ...
$ TCGA-CQ-6228-01: num 192 25 450 24 30 ...
$ TCGA-CQ-6229-01: num 33.1 9 312 16 57 ...
$ TCGA-CQ-7065-01: num 19 4 46 5 80 ...
$ TCGA-CQ-7068-01: num 86.1 5 86 0 55 ...
$ TCGA-CR-5243-01: num 95.6 4 1561 2 426 ...
$ TCGA-CR-5247-01: num 98 6 79 0 41 ...
$ TCGA-CR-5248-01: num 218 8 795 0 5 111 28 6 33 3 ...
$ TCGA-CR-5250-01: num 194 6 991 0 150 ...
$ TCGA-CR-6470-01: num 267 97 943 34 292 ...
$ TCGA-CR-6471-01: num 63.2 3 371 3 135 ...
[list output truncated]
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