firehose_get: Main function for downloading data from firehose.

Description Usage Arguments Value Examples

Description

Main function for downloading data from firehose.

Usage

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firehose_get(disease_cohort, data_type, run_type = "stddata",
  run_date = "latest", resume = TRUE)

Arguments

disease_cohort

use list_cohorts to check available disease cohorts.

data_type

"mutation", "expression", or "Aggregate_AnalysisFeatures".

run_type

use list_runs to check available run types.

run_date

use list_runs to check valid run dates.

resume

set TRUE to resume broken downloads.

Value

R object for firehose data.

Examples

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## Not run: 
mut_data <- firehose_get("HNSC", "mutation", run_date = "2015_08_21", run_type = "stddata")
exp_data <- firehose_get("HNSC", "expression", run_date = "2015_08_21", run_type = "stddata")

## End(Not run)

ys-amms/bionexr documentation built on May 4, 2019, 5:33 p.m.