firehose_get: Main function for downloading data from firehose.

In ys-amms/bionexr: Integrative network-based analysis of cancer somatic mutation and expression data

Description

Main function for downloading data from firehose.

Usage

firehose_get(disease_cohort, data_type, run_type = "stddata",
  run_date = "latest", resume = TRUE)

Arguments

disease_cohort	use list_cohorts to check available disease cohorts.
data_type	"mutation", "expression", or "Aggregate_AnalysisFeatures".
run_type	use list_runs to check available run types.
run_date	use list_runs to check valid run dates.
resume	set TRUE to resume broken downloads.

Value

R object for firehose data.

Examples

## Not run: 
mut_data <- firehose_get("HNSC", "mutation", run_date = "2015_08_21", run_type = "stddata")
exp_data <- firehose_get("HNSC", "expression", run_date = "2015_08_21", run_type = "stddata")

## End(Not run)

ys-amms/bionexr documentation built on May 4, 2019, 5:33 p.m.