perform_gene_ppi: Perform gene module of PPI-based approach.

In ys-amms/bionexr: Integrative network-based analysis of cancer somatic mutation and expression data

Description

Perform gene module of PPI-based approach.

Usage

perform_gene_ppi(df_user_mut, df_user_exp, sid_pattern = c("-01$", "-11$"),
  raw_count = TRUE)

Arguments

df_user_mut	Mutation dataframe.
df_user_exp	Gene expression dataframe.
sid_pattern	A regex string to match case and control IDs.
raw_count	Logical value, set TRUE to process RSEM-based expression data.

Value

A list.

Examples

## Not run: 

prepare_ma()
res.gene <- perform_gene_ppi(hnsc_mut_part, hnsc_exp_part)

## End(Not run)

ys-amms/bionexr documentation built on May 4, 2019, 5:33 p.m.