Description Usage Arguments Value Examples
Perform gene module of PPI-based approach.
1 2 | perform_gene_ppi(df_user_mut, df_user_exp, sid_pattern = c("-01$", "-11$"),
raw_count = TRUE)
|
df_user_mut |
Mutation dataframe. |
df_user_exp |
Gene expression dataframe. |
sid_pattern |
A regex string to match case and control IDs. |
raw_count |
Logical value, set TRUE to process RSEM-based expression data. |
A list.
1 2 3 4 5 6 | ## Not run:
prepare_ma()
res.gene <- perform_gene_ppi(hnsc_mut_part, hnsc_exp_part)
## End(Not run)
|
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