plot_pathway: visualize pathway-based network.

In ys-amms/bionexr: Integrative network-based analysis of cancer somatic mutation and expression data

Description

Visualized pathway-based network, this function takes network_from_significant_branches output as input.

Usage

plot_pathway(net, ...)

Arguments

net	An igraph object.
...	Other parameters.

Examples

## Not run: 

prepare_ma()
res.gene <- perform_gene_pathway(hnsc_mut_part, hnsc_exp_part)
res.network <- perform_network_pathway(res.gene[[2]], res.gene[[3]], hnsc_expressed_genes)

g <- network_from_significant_branches(res.network)
plot_pathway(g)

## End(Not run)

ys-amms/bionexr documentation built on May 4, 2019, 5:33 p.m.