network_from_significant_branches: Generate network from pathway branches.
In ys-amms/bionexr: Integrative network-based analysis of cancer somatic mutation and expression data
Description
Usage
Arguments
Value
Examples
Description
Generate network from pathway branches.
Usage
1
network_from_significant_branches(pathway_result, p_thres = 0.05)
Arguments
pathway_result
Pathway-based analysis result.
p_thres
P value threshold, default 0.05.
Value
A igraph object.
Examples
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## Not run:
prepare_ma()
res.gene <- perform_gene_pathway(hnsc_mut_part, hnsc_exp_part)
res.network <- perform_network_pathway(res.gene[[2]], res.gene[[3]], hnsc_expressed_genes)
g <- network_from_significant_branches(res.network)
## End(Not run)
ys-amms/bionexr documentation built on May 4, 2019, 5:33 p.m.
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Description Usage Arguments Value Examples
Description
Generate network from pathway branches.
Usage
1 | network_from_significant_branches(pathway_result, p_thres = 0.05)
|
Arguments
pathway_result |
Pathway-based analysis result. |
p_thres |
P value threshold, default 0.05. |
Value
A igraph object.
Examples
1 2 3 4 5 6 7 8 9 | ## Not run:
prepare_ma()
res.gene <- perform_gene_pathway(hnsc_mut_part, hnsc_exp_part)
res.network <- perform_network_pathway(res.gene[[2]], res.gene[[3]], hnsc_expressed_genes)
g <- network_from_significant_branches(res.network)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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