Description Usage Arguments Value Examples
Generate network from pathway branches.
1 | network_from_significant_branches(pathway_result, p_thres = 0.05)
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pathway_result |
Pathway-based analysis result. |
p_thres |
P value threshold, default 0.05. |
A igraph object.
1 2 3 4 5 6 7 8 9 | ## Not run:
prepare_ma()
res.gene <- perform_gene_pathway(hnsc_mut_part, hnsc_exp_part)
res.network <- perform_network_pathway(res.gene[[2]], res.gene[[3]], hnsc_expressed_genes)
g <- network_from_significant_branches(res.network)
## End(Not run)
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