Files in zdk123/SpiecEasi
Sparse Inverse Covariance for Ecological Statistical Inference
.Rbuildignore
.github/workflows/test_build.yml
DESCRIPTION
LICENSE.md
NAMESPACE
R/RcppExports.R
R/SparseICov.R
R/SparseLowRankICov.R
R/coat.R
R/community_graph.R
R/fitdistr.R
R/mvdistributions.R
R/normalization.R
R/plotNet.R
R/roc.R
R/select.R
R/spaRcc.R
R/spiec-easi-pkg.R
R/spiec-easi.R
R/utilities.R
README.Rmd
README.md
data/amgut1.filt.rda
data/amgut2.filt.phy.rda
data/hmp2.rda
inst/extdata/study_1925_closed_reference_otu_table.biom
inst/extdata/study_1925_closed_reference_otu_table.txt
inst/extdata/study_1925_mapping_file.txt
inst/extdata/study_1978_closed_reference_otu_table.biom
inst/extdata/study_1978_mapping_file.txt
inst/extdata/study_1978_split_library_log.txt
inst/extdata/taxmap.txt
man/AGP.Rd
man/SpiecEasi-package.Rd
man/adj2igraph.Rd
man/alr.Rd
man/as.data.frame.graph.Rd
man/as.matrix.graph.Rd
man/clr.Rd
man/coat.Rd
man/cor2cov.Rd
man/cov2prec.Rd
man/ebic.Rd
man/edge.diss.Rd
man/fitdistr.Rd
man/getOptInd.Rd
man/get_comm_params.Rd
man/graph2prec.Rd
man/hmp2.Rd
man/make_graph.Rd
man/multi.spiec.easi.Rd
man/neff.Rd
man/neighborhood.net.Rd
man/norm_pseudo.Rd
man/norm_rdiric.Rd
man/norm_to_total.Rd
man/prec2cov.Rd
man/pulsar.params.Rd
man/pval.sparccboot.Rd
man/qqdplot_comm.Rd
man/rmvnegbin.Rd
man/rmvnorm.Rd
man/rmvpois.Rd
man/rmvzinegbin.Rd
man/rmvzipois.Rd
man/robustPCA.Rd
man/rzipois.Rd
man/shannon.Rd
man/sparcc.Rd
man/sparccboot.Rd
man/sparseLowRankiCov.Rd
man/sparseiCov.Rd
man/spiec.easi.Rd
man/stars.roc.Rd
man/symBeta.Rd
man/synth_comm_from_counts.Rd
man/triu.Rd
src/ADMM.cpp
src/Makevars
src/RcppExports.cpp
src/matops.cpp
src/sqrtNewton.cpp
src/svthresh.cpp
tests/testthat.R
tests/testthat/test_graphs.R
tests/testthat/test_multidomain.R
tests/testthat/test_pulsar.R
tests/testthat/test_sparcc.R
tests/testthat/test_synth.R
