umi2tpm: normalize UMI matrix to TPM
In zzwch/convgene: This package is designed to conveniently convert gene between human and mouse.
Description
Usage
Arguments
Value
Description
normalize UMI matrix to TPM
Usage
1
umi2tpm(umi, scale.factor = 1e+06, margin = 2)
Arguments
umi
umi matrix
scale.factor
scale factor. default 1e6. recommend the mean of colSums(umi)
margin
Cells in which margin
Value
a matrix of tpm values
zzwch/convgene documentation built on July 11, 2021, 9:41 a.m.
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Description Usage Arguments Value
Description
normalize UMI matrix to TPM
Usage
1 | umi2tpm(umi, scale.factor = 1e+06, margin = 2)
|
Arguments
umi |
umi matrix |
scale.factor |
scale factor. default 1e6. recommend the mean of colSums(umi) |
margin |
Cells in which margin |
Value
a matrix of tpm values
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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