mclusterSim: mclusterSim
In DOSE: Disease Ontology Semantic and Enrichment analysis

Description Usage Arguments Value Author(s) Examples

Pairwise semantic similarity for a list of gene clusters

1	mclusterSim(clusters, measure = "Wang", combine = "BMA")

`clusters`	A list of gene clusters
`measure`	one of "Wang", "Resnik", "Rel", "Jiang", and "Lin".
`combine`	One of "max", "avg", "rcmax", "BMA" methods, for combining semantic similarity scores of multiple DO terms associated with gene/protein.

similarity matrix

Yu Guangchuang

cluster1 <- c("835", "5261","241")
cluster2 <- c("578","582")
cluster3 <- c("307", "308", "317")
clusters <- list(a=cluster1, b=cluster2, c=cluster3)
mclusterSim(clusters, measure="Wang")