subset.Motif: Subset a Motif object

In Signac: Analysis of Single-Cell Chromatin Data

Subset a Motif object

Description

Returns a subset of a Motif-class object.

Usage

## S3 method for class 'Motif'
subset(x, features = NULL, motifs = NULL, ...)

## S3 method for class 'Motif'
x[i, j, ...]

Arguments

x	A Motif object
features	Which features to retain
motifs	Which motifs to retain
...	Arguments passed to other methods
i	Which columns to retain
j	Which rows to retain

Value

Returns a subsetted Motif object

See Also

subset

Examples

motif.obj <- SeuratObject::GetAssayData(
  object = atac_small[['peaks']], layer = "motifs"
)
subset(x = motif.obj, features = head(rownames(motif.obj), 10))
motif.obj <- SeuratObject::GetAssayData(
  object = atac_small, assay = 'peaks', layer = 'motifs'
)
motif.obj[1:10,1:10]

Signac documentation built on Sept. 11, 2024, 9:30 p.m.