summary.hlaAttrBagObj: Summarize a "hlaAttrBagObj" object

In HIBAG: HIBAG -- HLA Genotype Imputation with Attribute Bagging

Description

Show the information of a hlaAttrBagObj object

Usage

## S3 method for class 'hlaAttrBagObj'
summary(object, show=TRUE, ...)

Arguments

object	an object of hlaAttrBagObj
show	if TRUE, show information
...	further arguments passed to or from other methods

Value

Return a list:

num.classifier	the total number of classifiers
num.snp	the total number of SNPs
snp.id	SNP IDs
snp.position	SNP position in basepair
snp.hist	the number of classifier for each SNP, and it could be used for SNP importance
info	a data.frame for the average number of SNPs (num.snp), haplotypes (num.haplo), out-of-bag accuracies (accuracy) among all classifiers: mean, standard deviation, min, max

Author(s)

Xiuwen Zheng

See Also

plot.hlaAttrBagObj, print.hlaAttrBagObj

HIBAG documentation built on May 2, 2019, 4:50 p.m.