Files in r4ss

R code for Stock Synthesis

R/selfit.R R/PinerPlot.R R/RebuildPlot.R R/SS_doRetro.R R/stackpoly.R R/SSplotSelex.R R/SSplotMnwt.R R/SS_html.R R/addSSsummarize.R R/SSplotYield.R R/SS_readctl.R R/bubble3.R R/SStableComparisons.R R/SSplotTimeseries.R R/SSplotMovementMap.R R/SSFishGraph.R R/make_multifig.R R/mcmc.nuisance.R R/SS_readstarter.R R/SS_parlines.R R/SSplotMCMC_ExtraSelex.R R/SS_readforecast.R R/SSgetMCMC.R R/SS_makedatlist.R R/SS_splitdat.R R/hist2d.R R/SSbootstrap.R R/SS_fitbiasramp.R R/SSsummarize.R R/movepars.R R/SS_plots.R R/SS_changepars.R R/rich.colors.short.R R/SS_profile.R R/SSplotPars.R R/mcmc.out.R R/SS_recdevs.R R/SSplotTags.R R/SS_write_length.fit.R R/selfit_spline.R R/SSplotDiscard.R R/SSplotRecdevs.R R/SS_writectl.R R/SSplotData.R R/SSplotBiology.R R/SSplotCohorts.R R/mountains.R R/SSplotMovementRates.R R/SS_output.R R/plotCI.R R/SSplotSPR.R R/SSplotCatch.R R/sel.line.R R/SSplotRetroRecruits.R R/SS_writeforecast.R R/SSplotSpawnrecruit.R R/SSplotProfile.R R/SS_writestarter.R R/IOTCmove.R R/TSCplot.R R/SSplotIndices.R R/SSplotComparisons.R R/SSgetoutput.R R/update_r4ss_files.R R/SSplotSummaryF.R R/SS_writedat.R R/SSplotComps.R R/SS_readdat.R R/SSplotRecdist.R R/SSplotRetroDevs.R R/SSplotNumbers.R man/SSsummarize.Rd man/mcmc.out.Rd man/r4ss-package.Rd man/SS_plots.Rd man/IOTCmove.Rd man/SSplotDiscard.Rd man/SSplotIndices.Rd man/SSplotNumbers.Rd man/SS_doRetro.Rd man/rich.colors.short.Rd man/stackpoly.Rd man/RebuildPlot.Rd man/SS_readdat.Rd man/SSplotTags.Rd man/SS_writedat.Rd man/make_multifig.Rd man/SS_html.Rd man/SSplotComps.Rd man/selfit_spline.Rd man/SSFishGraph.Rd man/selfit.Rd man/SSplotMCMC_ExtraSelex.Rd man/bubble3.Rd man/SSplotSelex.Rd man/SS_changepars.Rd man/SSplotBiology.Rd man/update_r4ss_files.Rd man/SSplotPars.Rd man/SSgetoutput.Rd man/mcmc.nuisance.Rd man/SSplotComparisons.Rd man/plotCI.Rd man/SSplotMovementRates.Rd man/SS_recdevs.Rd man/SS_profile.Rd man/SSplotData.Rd man/SSplotProfile.Rd man/SSplotRecdevs.Rd man/addSSsummarize.Rd man/SS_splitdat.Rd man/SS_writestarter.Rd man/mountains.Rd man/TSCplot.Rd man/SS_readctl.Rd man/SSplotCohorts.Rd man/hist2d.Rd man/SSbootstrap.Rd man/SSplotYield.Rd man/SS_parlines.Rd man/SSplotSPR.Rd man/SSplotMnwt.Rd man/movepars.Rd man/SSplotTimeseries.Rd man/SS_readstarter.Rd man/SS_makedatlist.Rd man/SSplotMovementMap.Rd man/SS_fitbiasramp.Rd man/SSgetMCMC.Rd man/SSplotSpawnrecruit.Rd man/SS_write_length.fit.Rd man/SStableComparisons.Rd man/SS_writeforecast.Rd man/SS_output.Rd man/SS_writectl.Rd man/sel.line.Rd man/SSplotSummaryF.Rd man/SSplotRetroDevs.Rd man/SSplotCatch.Rd man/SS_readforecast.Rd man/SSplotRecdist.Rd