plot.locoh.lxy: Plot LoCoH-xy object
In tlocoh: Constructs homeranges and explores time use patterns from location data

Description Usage Arguments Details See Also

Multi-purpose plotting function for a LoCoH-xy object

## S3 method for class 'locoh.lxy'
plot(x, lxy, id = NULL, cex = 0.8,
  show.start = TRUE, show.end = TRUE, col = c("auto", "gray80")[1],
  connect.dots = TRUE, overlay = FALSE, status = TRUE,
  title = NULL, title.show = TRUE, axes.show = TRUE,
  axes.titles = axes.show, axes.ticks = axes.show, mar = c(if
  (axes.titles || axes.ticks) 3.3 else 0.5, if (axes.titles || axes.ticks)
  3.2 else 0.5, if (title.show) 3.2 else 0.5, 0.5), mgp = c(2, 0.7, 0),
  lo.save = TRUE, panel.num = NULL,
  panel.num.inside.plot = !title.show, png.fn = NULL, png.dir = NULL,
  png.dir.make = TRUE, png.width = 800, png.height = png.width,
  png.overwrite = TRUE, png.pointsize = 12 + (png.width - 480)/80,
  tiff.fn = NULL, tiff.bands = c(3, 2, 1),
  tiff.col = gray(0:255/255), tiff.pct = FALSE, tiff.buff = 0,
  tiff.fill.plot = TRUE, layers = NULL, shp.csv = NULL,
  xlim = NULL, ylim = NULL, legend = NULL, add = FALSE, ...)

`x`	A LoCoH-xy object
`lxy`	Deprecated, use `x` instead
`id`	A vector of the id value(s) to plot
`cex`	Character expansion factor for the points
`show.start`	Whether to highlight the starting location (if time stamps are present) in green. T/F.
`show.end`	Whether to highlight the end location (if time stamps are present) in red. T/F.
`col`	A single value or vector of color values. Can also be 'auto' in which case the colors saved in `lxy` will be used (which are rainbow by default).
`connect.dots`	Whether to draw line segments between consecutive locations. T/F.
`overlay`	Whether to overlay the plots of all individuals in `lxy` on one pair of axes (map). T/F.
`status`	Display status messages. T/F.
`title`	The title to be displayed. Character. If NULL a title will be constructed.
`title.show`	Whether to show the title. T/F.
`axes.show`	Whether to show the axes. T/F.
`axes.titles`	Whether to show axes titles. T/F.
`axes.ticks`	Whether to show the tick marks and labels on the axes. T/F.
`mar`	The plot margins. A four item numeric vector
`mgp`	The distance away from the edge of the plot for the 1) label, 2) tick marks, and 3) axis line. A three-item numeric vector
`lo.save`	Whether to save and reset the plot device margin settings (some wrapper functions that call this function don't want device settings reset). T/F.
`panel.num`	A number or letter to display in the upper left hand corner of the plot when the plot will be used as part of a multi-frame graphic (as in publications). Character
`panel.num.inside.plot`	Whether to display panel.num inside the plot area itself, as opposed to the title area. T/F
`png.fn`	The path and name of the PNG file to create (instead of displaying in a plot window)
`png.dir`	The directory for a PNG file (filename will be constructed automatically). Ignored if png.fn is passed
`png.dir.make`	Whether to create png.dir if it doesn't exist. T/F
`png.width`	The width of the PNG image
`png.height`	The height of the PNG image
`png.overwrite`	Whether to overwrite an existing PNG file if it exists. T/F
`png.pointsize`	The pointsize (in pixels) for the PNG image, equivalent to the height or width of a character in pixels (increase to make labels appear larger)
`tiff.fn`	The path and name of a GeoTIFF file (e.g., satellite image) that will be displayed in the background. See notes.
`tiff.bands`	A vector of threee integers corresponding to the bands of the GeoTIFF image that will be mapped to the red, green and blue color guns respectively.
`tiff.col`	A vector of color values for plotting single-band images in the background. Ignored if using three bands.
`tiff.pct`	Whether or to convert the GeoTIFF to an indexed 256 color RGB image, which may speed up drawing. T/F.
`tiff.buff`	A numeric buffer distance in map units that the range of the plot will be expanded so the points are not right on the edge of the GeoTIFF.
`tiff.fill.plot`	Whether to fill the entire plot area with the GeoTIFF. T/F.
`layers`	The name(s) of layers in shp.csv to display in the background. Will be displayed using the symbology in shp.csv. Character vector or comma delimited string
`shp.csv`	The path and filename of a csv file that contains information about shapefiles, including layer names, file, and symbology.
`xlim`	The lower and upper limit of the x-axis, two-element numeric vector
`ylim`	The lower and upper limit of the y-axis, two-element numeric vector
`legend`	One of the following keywords specifying where to put a legend when overlaying the locations of multiple individuals: `bottomright`, `bottom`, `bottomleft`, `left`, `topleft`, `top`, `topright`, `right` or `center`
`add`	Whether to add to an existing plot. T/F.
`...`	Additional parameters that will be passed to the `plot` function

This is a multi-purpose plotting function for a LoCoH-xy object, with several custom arguments useful for plotting a movement trajectory. You may also extract the SpatialPointsDataFrame element of the LoCoH-xy object directly by referencing the pts element (e.g., x$pts, where x is a LoCoH-xy object).

Vignette on T-LoCoH data classes, Tutorial Vignette (for details on displyaing GIS layers and raster images in the background)

tlocoh documentation built on May 2, 2019, 5:27 p.m.