Files in CHRONOS
CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis
.BBSoptions
NAMESPACE
DESCRIPTION
build/vignette.rds
java/FileIO.java
java/Graph.java
java/LinearPaths.java
R/pathwayMeasures.R
R/mRNAconversion.R
R/subStatistics.R
R/pathwayAnalysis.R
R/subScores.R
R/subExtractionNonLinear.R
R/utilities.R
R/dataImport.R
R/miRNAconversion.R
R/CHRONOSrun.R
R/subVisualization.R
R/miRNAdownload.R
R/zzz.R
R/pathwayDownload.R
R/subRefinement.R
R/pathwayToGraph.R
R/subExtractionLinear.R
vignettes/CHRONOS.Rmd
vignettes/figures/results.png
man/createPathwayGraphs.Rd
man/downloadMiRecords.Rd
man/importExpressions.Rd
man/convertNomenclature.Rd
man/pathwayMeasures.Rd
man/scoreSubpathways.Rd
man/visualizeResults.Rd
man/getEdgeTypes.Rd
man/extractNonLinearSubpathways.Rd
man/subpathwayKEGGmap.Rd
man/extractLinearSubpathways.Rd
man/subpathwayMiRNAs.Rd
man/convertMiRNANomenclature.Rd
man/downloadKEGGPathwayList.Rd
man/downloadPathways.Rd
man/CHRONOSrun.Rd
tests/runTests.R
inst/NEWS
inst/CITATION
inst/doc/CHRONOS.Rmd
inst/doc/CHRONOS.pdf
inst/doc/CHRONOS.R
inst/java/CHRONOS.jar
inst/extdata/User/mRNAexpressions.txt
inst/extdata/User/TarBase.xlsx
inst/extdata/User/miRecords.xlsx
inst/extdata/User/miRNAexpressions.txt
inst/extdata/User/interestingGenes.txt
inst/extdata/Downloads/KEGG/hsa/hsa04917.xml
inst/extdata/Downloads/KEGG/hsa/hsa04930.xml
inst/extdata/Downloads/KEGG/hsa/hsa04915.xml
inst/extdata/Downloads/KEGG/hsa/hsa05031.xml
inst/extdata/Downloads/mirbase/miRNAmaps_hsa.RData
inst/extdata/Downloads/mirbase/miRNAmaps_cel.RData
inst/extdata/Downloads/mirbase/miRNAmaps_oar.RData
inst/extdata/Downloads/mirbase/miRNAmaps_dme.RData
inst/extdata/Downloads/mirbase/miRNAmaps_gga.RData
inst/extdata/Downloads/mirbase/miRNAmaps_mmu.RData
inst/extdata/Downloads/mirbase/miRNAmaps_dre.RData
inst/extdata/Downloads/mirbase/miRNAmaps_rno.RData
inst/extdata/Downloads/mirbase/miRNAmaps_cfa.RData
inst/extdata/Examples/data.RData
inst/extdata/Examples/kgml/hsa04917.xml
inst/extdata/Examples/kgml/hsa04930.xml
inst/extdata/Examples/kgml/hsa04915.xml
inst/extdata/Examples/kgml/hsa05031.xml
inst/unitTests/test_pathwayToGraph.R
inst/unitTests/test_subRefinement.R
inst/unitTests/test_subVisualization.R
inst/unitTests/test_subExtractionLinear.R
inst/unitTests/test_subExtractionNonLinear.R
inst/unitTests/test_CHRONOSrun.R
