assay-ExperimentSubset-character-method: Accessor method for assays in ExperimentSubset objects

In ExperimentSubset: Manages subsets of data with Bioconductor Experiment objects

Description

Method to get an assay from an ExperimentSubset object or a subset from an ExperimentSubset object or any object supported by assay from SummarizedExperiment.

Usage

## S4 method for signature 'ExperimentSubset,character'
assay(x, i, withDimnames = FALSE, ...)

Arguments

x	ExperimentSubset Specify the input object which can be either ExperimentSubset or any object supported by assay from SummarizedExperiment.
i	character(1) Name of an assay or name of a subset or name of a subset assay.
withDimnames	logical(1) Set whether dimnames should be applied to assay. Default FALSE.
...	Additional parameters.

Value

The assay from the input object.

Examples

data(sce_chcl, package = "scds")
es <- ExperimentSubset(sce_chcl)
es <- createSubset(es, "subset1",
rows = c(10,11,50,56,98,99,102,105,109, 200),
cols = c(20,21,40,45,90,99,100,123,166,299),
parentAssay = "counts")
assay(es, "subset1",
subsetAssayName = "subset1pAssay") <- assay(es, "subset1")[,] + 1
es

ExperimentSubset documentation built on Nov. 8, 2020, 5:03 p.m.