altExp-set: Alternative Experiment methods for ExperimentSubset objects

In ExperimentSubset: Manages subsets of data with Bioconductor Experiment objects

Description

A wrapper to the altExp<- from altExps method with additional support for subsets.

Usage

altExp(x, e, withColData = FALSE, subsetName) <- value

## S4 replacement method for signature 'ANY'
altExp(x, e, withColData = FALSE, subsetName) <- value

Arguments

x	ExperimentSubset Input ExperimentSubset object or any object supported by altExp<- from altExps method.
e	character(1) Same as altExp<- from altExps method.
withColData	logical(1) Same as altExp<- from altExps method. Default FALSE.
subsetName	character(1) Specify the name of the subset to which the altExp<- should be set to. If missing, altExp<- from altExps method is called on the main object.
value	SingleCellExperiment Input value same as altExp<- from altExps method.

Value

Input object with altExp<- set.

Examples

data(sce_chcl, package = "scds")
es <- ExperimentSubset(sce_chcl)
es <- createSubset(es,
"subset1",
rows = c(10,11,50,56,98,99,102,105,109, 200),
cols = c(20,21,40,45,90,99,100,123,166,299),
parentAssay = "counts")
altExp(es, e = "altExample",
subsetName = "subset1") <- SingleCellExperiment(
assays = list(counts = assay(es, "subset1")))

ExperimentSubset documentation built on Nov. 8, 2020, 5:03 p.m.