assay-set-ExperimentSubset-character-method: Setter method for assays in ExperimentSubset objects

In ExperimentSubset: Manages subsets of data with Bioconductor Experiment objects

Description

Method to set an assay to an ExperimentSubset object or a subset from an ExperimentSubset object or any object supported by assay<- from SummarizedExperiment.

Usage

## S4 replacement method for signature 'ExperimentSubset,character'
assay(x, i, withDimnames = FALSE, subsetAssayName = NULL, ...) <- value

Arguments

x	ExperimentSubset Input ExperimentSubset object or any object supported by assay from SummarizedExperiment.
i	character(1) Name of an assay or name of the subset if storing to an ExperimentSubset object.
withDimnames	logical(1) Set whether dimnames should be applied to assay. Default FALSE.
subsetAssayName	character(1) Name of the assay to store if storing to an ExperimentSubset object.
...	Additional parameters.
value	dgCMatrix The assay to store.

Value

Input object with assay stored.

Examples

data(sce_chcl, package = "scds")
es <- ExperimentSubset(sce_chcl)
es <- createSubset(es, "subset1",
rows = c(10,11,50,56,98,99,102,105,109, 200),
cols = c(20,21,40,45,90,99,100,123,166,299),
parentAssay = "counts")
assay(es, "subset1",
subsetAssayName = "subset1pAssay") <- assay(es, "subset1")[,] + 1
es

ExperimentSubset documentation built on Nov. 8, 2020, 5:03 p.m.