subsetParent: Subset parent hierarchy retrieval method for ExperimentSubset...

In ExperimentSubset: Manages subsets of data with Bioconductor Experiment objects

Description

Retrieves a complete subset to parent link from a specified subset.

Usage

subsetParent(object, subsetName)

## S4 method for signature 'ANY'
subsetParent(object, subsetName)

Arguments

object	ExperimentSubset Input ExperimentSubset object.
subsetName	character(1) Specify the name of the subset against which the subset to parent link should be retrieved.

Value

A list containing the parent link of the subset.

Examples

data(sce_chcl, package = "scds")
es <- ExperimentSubset(sce_chcl)
es <- createSubset(es, "subset1",
rows = c(10,11,50,56,98,99,102,105,109, 200),
cols = c(20,21,40,45,90,99,100,123,166,299),
parentAssay = "counts")
assay(es, "subset1",
subsetAssayName = "subset1pAssay") <- assay(es, "subset1")[,] + 1
subsetParent(es, "subset1pAssay")

ExperimentSubset documentation built on Nov. 8, 2020, 5:03 p.m.