altExps: Alternative Experiment methods for ExperimentSubset objects

In ExperimentSubset: Manages subsets of data with Bioconductor Experiment objects

Description

A wrapper to the altExps method with additional support for subsets.

Usage

altExps(x, withColData = FALSE, subsetName)

## S4 method for signature 'ANY'
altExps(x, withColData = FALSE, subsetName)

Arguments

x	ExperimentSubset Input ExperimentSubset object or any object supported by altExps method.
withColData	logical(1) Same as altExps. Default FALSE.
subsetName	character(1) Specify the name of the subset from which the altExps should be fetched from. If missing, altExps method is called on the main object.

Value

altExps from the specified subset or same as altExps when subsetName is missing.

Examples

data(sce_chcl, package = "scds")
es <- ExperimentSubset(sce_chcl)
es <- createSubset(es, "subset1",
rows = c(10,11,50,56,98,99,102,105,109, 200),
cols = c(20,21,40,45,90,99,100,123,166,299),
parentAssay = "counts")
altExps(es, subsetName = "subset1") <- list(
alt1 = SingleCellExperiment(
assays = list(
counts = assay(es, "subset1"))),
alt2 = SingleCellExperiment(
assays = list(counts = assay(es, "subset1"))))
altExps(es, subsetName = "subset1")

ExperimentSubset documentation built on Nov. 8, 2020, 5:03 p.m.