altExpNames: Alternative Experiment methods for ExperimentSubset objects

In ExperimentSubset: Manages subsets of data with Bioconductor Experiment objects

Description

A wrapper to the altExpNames from altExps method with additional support for subsets.

Usage

altExpNames(x, subsetName)

## S4 method for signature 'ANY'
altExpNames(x, subsetName)

Arguments

x	ExperimentSubset Input ExperimentSubset object or any object supported by altExpNames from altExps method.
subsetName	character(1) Specify the name of the subset from which the altExpNames should be fetched from. If missing, altExpNames from altExps method is called on the main object.

Value

The altExpNames from the specified subset or same as altExpNames from altExps when subsetName is missing.

Examples

data(sce_chcl, package = "scds")
es <- ExperimentSubset(sce_chcl)
es <- createSubset(es,
"subset1",
rows = c(10,11,50,56,98,99,102,105,109, 200),
cols = c(20,21,40,45,90,99,100,123,166,299),
parentAssay = "counts")
altExp(es, e = "altExample",
subsetName = "subset1") <- SingleCellExperiment(
assays = list(counts = assay(es, "subset1")))
altExpNames(es, subsetName = "subset1")

ExperimentSubset documentation built on Nov. 8, 2020, 5:03 p.m.