Files in FindMyFriends

Microbial Comparative Genomics in R

README.md R/constructor.R R/similarities.R R/aaa.R R/progress.R R/RcppExports.R R/generics.R R/pgVirtual.R R/pgLMLoc.R R/FindMyFriends-package.R R/pgLM.R R/modifying.R R/linking.R R/pgInMemLoc.R R/investigating.R R/ggGraph.R R/pgFullLoc.R R/pgFull.R R/pgSlim.R R/pgVirtualLoc.R R/pgSlimLoc.R R/grouping.R R/linearKernel.R R/pgInMem.R R/splitting.R vignettes/FindMyFriends_intro.Rmd man/nGeneGroups.Rd man/hasParalogueLinks.Rd man/getNeighborhood.Rd man/orgStat.Rd man/loadPgExample.Rd man/pgVirtualLoc-class.Rd man/plotGroup.Rd man/geneLocation.Rd man/plotStat.Rd man/internalGroupGenes.Rd man/kmerLink.Rd man/removeGene.Rd man/variableRegions.Rd man/hasGeneInfo.Rd man/pgFullLoc-class.Rd man/plotEvolution.Rd man/pgInMem-class.Rd man/collapseParalogues.Rd man/pgMatrix.Rd man/pgSlimLoc-class.Rd man/pgSlim-class.Rd man/graphGrouping.Rd man/orgNames.Rd man/seqToOrg.Rd man/seqToGeneGroup.Rd man/getRep.Rd man/pgVirtual-class.Rd man/groupInfo.Rd man/pgLMLoc-class.Rd man/cdhitGrouping.Rd man/addGroupInfo.Rd man/fillDefaults.Rd man/kmerSplit.Rd man/translated.Rd man/plotSimilarity.Rd man/genes.Rd man/pcGraph.Rd man/kmerSimilarity.Rd man/gpcGrouping.Rd man/groupStat.Rd man/addGenomes.Rd man/pangenome.Rd man/geneNames.Rd man/pgLM-class.Rd man/nGenes.Rd man/pgInMemLoc-class.Rd man/FindMyFriends-package.Rd man/orgInfo.Rd man/defaults.Rd man/pgFull-class.Rd man/readAnnot.Rd man/addOrgInfo.Rd man/plotTree.Rd man/reportGroupChanges.Rd man/geneWidth.Rd man/internalMetadata.Rd man/manualGrouping.Rd man/hasGeneGroups.Rd man/plotNeighborhood.Rd man/groupNames.Rd man/internalMergePangenomes.Rd man/nOrganisms.Rd man/neighborhoodSplit.Rd tests/testthat.R tests/testthat/test-geneLocation.R tests/testthat/test-addGenomes.R tests/testthat/test-splitting.R tests/testthat/test-parallelLinearKernel.R tests/testthat/test-pgLM.R tests/testthat/test-grouping.R tests/testthat/test-pgFull.R tests/testthat/test-loadPgExample.R tests/testthat/test-defaults.R tests/testthat/test-modifying.R tests/testthat/test-constructor.R tests/testthat/test-investigating.R tests/testthat/test-pgSlim.R tests/testthat/test-linking.R tests/testthat/test-orgCompare.R tests/testthat/test-splitAndBind.R tests/testthat/test-GPC.R tests/testthat/test-similarities.R inst/doc/FindMyFriends_intro.R inst/doc/FindMyFriends_intro.Rmd