FlowSOM
Using self-organizing maps for visualization and interpretation of cytometry data

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Vignettes
Functions
101
Source code
6
Man pages
45
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FlowSOM: Using self-organizing maps for visualization and interpretation of cytometry data
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API

API for FlowSOM
Using self-organizing maps for visualization and interpretation of cytometry data

Global functions
AddFlowFrame Man page Source code
AggregateFlowFrames Man page Source code
BuildMST Man page Source code
BuildSOM Man page Source code
CountGroups Man page
DetermineNumberOfClusters Source code
Dist.MST Man page Source code
FMeasure Man page Source code
FlowSOM Man page Source code
FlowSOMSubset Man page Source code
GetCVs Man page Source code
GetClusters Man page Source code
GetFlowJoLabels Man page Source code
GetMFIs Man page Source code
GetMetaclusters Man page Source code
Initialize_KWSP Man page Source code
Initialize_PCA Man page Source code
MapDataToCodes Man page
MetaClustering Man page Source code
MetaclusterCVs Man page Source code
MetaclusterMFIs Man page Source code
NewData Man page Source code
PlotBackgroundLegend Source code
PlotCenters Man page Source code
PlotClusters2D Man page Source code
PlotGroups Man page Source code
PlotLabels Man page Source code
PlotMarker Man page Source code
PlotNode Man page Source code
PlotNumbers Man page Source code
PlotOverview2D Man page Source code
PlotPies Man page Source code
PlotSD Man page Source code
PlotStars Man page Source code
PlotVariable Man page Source code
Purity Man page Source code
QueryStarPlot Man page Source code
ReadInput Man page Source code
SOM Man page
SSE Source code
SaveClustersToFCS Man page Source code
TestOutliers Man page Source code
UpdateDerivedValues Source code
UpdateNodeSize Man page Source code
computeBackgroundColor Man page Source code
consensus Source code
findElbow Source code
get_channels Man page Source code
get_markers Man page Source code
legendContinuous Source code
lookup Source code
metaClustering_consensus Man page Source code
metaClustering_hclust Source code
metaClustering_kmeans Source code
metaClustering_som Source code
mystar Source code
plotStarLegend Man page Source code
plotStarQuery Source code
shiftFunction Source code
FlowSOM documentation built on Nov. 8, 2020, 6:40 p.m.

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