get_channels: get_channels
In FlowSOM: Using self-organizing maps for visualization and interpretation of cytometry data
Description
Usage
Arguments
Value
See Also
Examples
Description
Get channel names for an array of markers, given a flowframe
Usage
1
get_channels(ff, markers)
Arguments
ff
The flowFrame of interest
markers
Vector with markers or channels of interest
Value
Corresponding channel names
See Also
Examples
1
2
3
4
5
# Read the flowFrame
fileName <- system.file("extdata", "68983.fcs", package="FlowSOM")
ff <- flowCore::read.FCS(fileName)
get_channels(ff, c("FSC-A", "CD3", "FITC-A"))
get_markers(ff, c("FSC-A", "CD3", "FITC-A"))
FlowSOM documentation built on Nov. 8, 2020, 6:40 p.m.
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Description Usage Arguments Value See Also Examples
Description
Get channel names for an array of markers, given a flowframe
Usage
1 | get_channels(ff, markers)
|
Arguments
ff |
The flowFrame of interest |
markers |
Vector with markers or channels of interest |
Value
Corresponding channel names
See Also
Examples
1 2 3 4 5 | # Read the flowFrame
fileName <- system.file("extdata", "68983.fcs", package="FlowSOM")
ff <- flowCore::read.FCS(fileName)
get_channels(ff, c("FSC-A", "CD3", "FITC-A"))
get_markers(ff, c("FSC-A", "CD3", "FITC-A"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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