BuildMST: Build Minimal Spanning Tree
In FlowSOM: Using self-organizing maps for visualization and interpretation of cytometry data
Description
Usage
Arguments
Value
See Also
Examples
Description
Add minimal spanning tree description to the FlowSOM object
Usage
1
Arguments
fsom
FlowSOM object, as generated by BuildSOM
silent
If TRUE, no progress updates will be printed
tSNE
If TRUE, an alternative tSNE layout is computed as well
Value
FlowSOM object containing MST description
See Also
Examples
1
2
3
4
5
6
7
8
# Read from file, build self-organizing map
fileName <- system.file("extdata", "68983.fcs", package="FlowSOM")
flowSOM.res <- ReadInput(fileName, compensate=TRUE,transform=TRUE,
scale=TRUE)
flowSOM.res <- BuildSOM(flowSOM.res,colsToUse=c(9,12,14:18))
# Build the Minimal Spanning Tree
flowSOM.res <- BuildMST(flowSOM.res)
FlowSOM documentation built on Nov. 8, 2020, 6:40 p.m.
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Description Usage Arguments Value See Also Examples
Description
Add minimal spanning tree description to the FlowSOM object
Usage
1 |
Arguments
fsom |
FlowSOM object, as generated by |
silent |
If |
tSNE |
If |
Value
FlowSOM object containing MST description
See Also
Examples
1 2 3 4 5 6 7 8 | # Read from file, build self-organizing map
fileName <- system.file("extdata", "68983.fcs", package="FlowSOM")
flowSOM.res <- ReadInput(fileName, compensate=TRUE,transform=TRUE,
scale=TRUE)
flowSOM.res <- BuildSOM(flowSOM.res,colsToUse=c(9,12,14:18))
# Build the Minimal Spanning Tree
flowSOM.res <- BuildMST(flowSOM.res)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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