GetClusters: Get cluster label for all individual cells

Description Usage Arguments Value Examples

View source: R/2_buildSOM.R

Description

Get cluster label for all individual cells

Usage

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Arguments

fsom

FlowSOM object as generated by the FlowSOM function or the BuildSOM function

Value

vector label for every cell

Examples

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fileName <- system.file("extdata", "68983.fcs", package="FlowSOM")
flowSOM.res <- FlowSOM(fileName, compensate=TRUE,transform=TRUE,
                      scale=TRUE,colsToUse=c(9,12,14:18),nClus=10)
cluster_labels <- GetClusters(flowSOM.res)
cluster_labels <- GetClusters(flowSOM.res$FlowSOM)

FlowSOM documentation built on Nov. 8, 2020, 6:40 p.m.