GetClusters: Get cluster label for all individual cells
In FlowSOM: Using self-organizing maps for visualization and interpretation of cytometry data
Description
Usage
Arguments
Value
Examples
Description
Get cluster label for all individual cells
Usage
1
GetClusters(fsom)
Arguments
fsom
FlowSOM object as generated by the FlowSOM function
or the BuildSOM function
Value
vector label for every cell
Examples
1
2
3
4
5
fileName <- system.file("extdata", "68983.fcs", package="FlowSOM")
flowSOM.res <- FlowSOM(fileName, compensate=TRUE,transform=TRUE,
scale=TRUE,colsToUse=c(9,12,14:18),nClus=10)
cluster_labels <- GetClusters(flowSOM.res)
cluster_labels <- GetClusters(flowSOM.res$FlowSOM)
FlowSOM documentation built on Nov. 8, 2020, 6:40 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
Get cluster label for all individual cells
Usage
1 | GetClusters(fsom)
|
Arguments
fsom |
FlowSOM object as generated by the FlowSOM function or the BuildSOM function |
Value
vector label for every cell
Examples
1 2 3 4 5 | fileName <- system.file("extdata", "68983.fcs", package="FlowSOM")
flowSOM.res <- FlowSOM(fileName, compensate=TRUE,transform=TRUE,
scale=TRUE,colsToUse=c(9,12,14:18),nClus=10)
cluster_labels <- GetClusters(flowSOM.res)
cluster_labels <- GetClusters(flowSOM.res$FlowSOM)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.