computeBackgroundColor: Internal function for computing background nodes

In FlowSOM: Using self-organizing maps for visualization and interpretation of cytometry data

Description

Internal function for computing background nodes

Usage

computeBackgroundColor(
  backgroundValues,
  backgroundColor,
  backgroundLim = NULL,
  backgroundBreaks = NULL
)

Arguments

backgroundValues	Values to be used for background coloring, either numerical values or something that can be made into a factor (e.g. a clustering)
backgroundColor	Colorpalette to be used for the background coloring . Can be either a function or an array specifying colors
backgroundLim	Only used when backgroundValues are numerical. Defaults to min and max of the backgroundValues.
backgroundBreaks	Breaks to pass on to cut, to split numerical background values. If NULL, the length of backgroundColor will be used (default 100).

FlowSOM documentation built on Nov. 8, 2020, 6:40 p.m.