MetaclusterCVs: MetaclusterCVs
In FlowSOM: Using self-organizing maps for visualization and interpretation of cytometry data
Description
Usage
Arguments
Value
Examples
View source: R/4_metaClustering.R
Description
Compute the coefficient of variation for the metaclusters
Usage
1
MetaclusterCVs(fsom)
Arguments
fsom
Result of calling the FlowSOM function
Value
Metacluster CVs
Examples
1
2
3
4
5
6
7
8
fileName <- system.file("extdata", "68983.fcs", package="FlowSOM")
ff <- flowCore::read.FCS(fileName)
ff <- flowCore::compensate(ff,ff@description$SPILL)
ff <- flowCore::transform(ff,
flowCore::transformList(colnames(ff@description$SPILL),
flowCore::logicleTransform()))
flowSOM.res <- FlowSOM(ff,scale=TRUE,colsToUse=c(9,12,14:18), nClus=10)
cvs <- MetaclusterCVs(flowSOM.res)
FlowSOM documentation built on Nov. 8, 2020, 6:40 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
View source: R/4_metaClustering.R
Description
Compute the coefficient of variation for the metaclusters
Usage
1 | MetaclusterCVs(fsom)
|
Arguments
fsom |
Result of calling the FlowSOM function |
Value
Metacluster CVs
Examples
1 2 3 4 5 6 7 8 | fileName <- system.file("extdata", "68983.fcs", package="FlowSOM")
ff <- flowCore::read.FCS(fileName)
ff <- flowCore::compensate(ff,ff@description$SPILL)
ff <- flowCore::transform(ff,
flowCore::transformList(colnames(ff@description$SPILL),
flowCore::logicleTransform()))
flowSOM.res <- FlowSOM(ff,scale=TRUE,colsToUse=c(9,12,14:18), nClus=10)
cvs <- MetaclusterCVs(flowSOM.res)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.