MetaclusterCVs: MetaclusterCVs

Description Usage Arguments Value Examples

View source: R/4_metaClustering.R

Description

Compute the coefficient of variation for the metaclusters

Usage

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Arguments

fsom

Result of calling the FlowSOM function

Value

Metacluster CVs

Examples

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fileName <- system.file("extdata", "68983.fcs", package="FlowSOM")
ff <- flowCore::read.FCS(fileName)
ff <- flowCore::compensate(ff,ff@description$SPILL)
ff <- flowCore::transform(ff,
         flowCore::transformList(colnames(ff@description$SPILL),
                                flowCore::logicleTransform()))
flowSOM.res <- FlowSOM(ff,scale=TRUE,colsToUse=c(9,12,14:18), nClus=10)
cvs <- MetaclusterCVs(flowSOM.res)

FlowSOM documentation built on Nov. 8, 2020, 6:40 p.m.