GetCVs: Get CV values for all clusters
In FlowSOM: Using self-organizing maps for visualization and interpretation of cytometry data
Description
Usage
Arguments
Value
Description
Get CV values for all clusters
Usage
1
GetCVs(fsom)
Arguments
fsom
FlowSOM object as generated by the FlowSOM function
or the BuildSOM function
Value
Matrix with coefficient of variation values for each marker
fileName <- system.file("extdata", "68983.fcs", package="FlowSOM")
flowSOM.res <- FlowSOM(fileName, compensate=TRUE,transform=TRUE,
scale=TRUE,colsToUse=c(9,12,14:18),nClus=10)
cvs <- GetCVs(flowSOM.res)
cvs <- GetCVs(flowSOM.res$FlowSOM)
FlowSOM documentation built on Nov. 8, 2020, 6:40 p.m.
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Description Usage Arguments Value
Description
Get CV values for all clusters
Usage
1 | GetCVs(fsom)
|
Arguments
fsom |
FlowSOM object as generated by the FlowSOM function or the BuildSOM function |
Value
Matrix with coefficient of variation values for each marker
fileName <- system.file("extdata", "68983.fcs", package="FlowSOM") flowSOM.res <- FlowSOM(fileName, compensate=TRUE,transform=TRUE, scale=TRUE,colsToUse=c(9,12,14:18),nClus=10) cvs <- GetCVs(flowSOM.res) cvs <- GetCVs(flowSOM.res$FlowSOM)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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