GenVisR
Genomic Visualizations in R

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286
Source code
108
Man pages
56
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GenVisR: Genomic Visualizations in R
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API

API for GenVisR
Genomic Visualizations in R

Global functions
.getData_Lolliplot Man page Source code
.getData_MutSpectra Man page Source code
.getData_Rainfall Man page Source code
.getData_waterfall Man page Source code
.getGrob_Lolliplot Source code
.getGrob_MutSpectra Source code
.getGrob_Rainfall Source code
.getGrob_Waterfall Source code
.setClinicalPlotLayers Source code
Clinical Man page Source code
Clinical-class Man page
ClinicalData Source code
GMS Man page Source code
GMS-class Man page
GMS_Virtual-class Man page
GMS_v4 Man page Source code
GMS_v4-class Man page
GenVisR Man page
HCC1395_Germline Man page
HCC1395_N Man page
HCC1395_T Man page
Lolliplot Man page Source code
Lolliplot-class Man page
LolliplotData Source code
LolliplotPlots Source code
LucCNseg Man page
MutSpectra Man page Source code
MutSpectra-class Man page
MutSpectraPlots Source code
MutSpectraPrimaryData Source code
MutationAnnotationFormat Man page Source code
MutationAnnotationFormat-class Man page
MutationAnnotationFormat_Virtual-class Man page
MutationAnnotationFormat_v1.0 Man page Source code
MutationAnnotationFormat_v1.0-class Man page
MutationAnnotationFormat_v2.0 Man page Source code
MutationAnnotationFormat_v2.0-class Man page
MutationAnnotationFormat_v2.1 Man page Source code
MutationAnnotationFormat_v2.1-class Man page
MutationAnnotationFormat_v2.2 Man page Source code
MutationAnnotationFormat_v2.2-class Man page
MutationAnnotationFormat_v2.3 Man page Source code
MutationAnnotationFormat_v2.3-class Man page
MutationAnnotationFormat_v2.4 Man page Source code
MutationAnnotationFormat_v2.4-class Man page
PIK3CA Man page
Rainfall Man page Source code
Rainfall-class Man page
RainfallPlots Source code
RainfallPrimaryData Source code
SNPloci Man page
TvTi Man page Source code
TvTi_alignPlot Source code
TvTi_annoTransTranv Source code
TvTi_buildMain Source code
TvTi_calcTransTranvFreq Source code
TvTi_convMaf Source code
TvTi_qual Source code
TvTi_rmIndel Source code
TvTi_rmMnuc Source code
VEP Man page Source code
VEP-class Man page
VEP_Virtual-class Man page
VEP_v88 Man page Source code
VEP_v88-class Man page
Waterfall Man page Source code
Waterfall-class Man page
WaterfallData Source code
WaterfallPlots Source code
brcaMAF Man page
cnFreq Man page Source code
cnFreq_buildMain Source code
cnFreq_disjoin Source code
cnFreq_qual Source code
cnSpec Man page Source code
cnSpec_buildMain Source code
cnSpec_qual Source code
cnView Man page Source code
cnView_buildMain Source code
cnView_qual Source code
compIdent Man page Source code
compIdent_bamRcnt Source code
compIdent_bamRcnt_qual Source code
compIdent_buildMain Source code
compIdent_format Source code
covBars Man page Source code
covBars_buildMain Source code
covBars_qual Source code
cytoGeno Man page
drawPlot Man page
drawPlot,Clinical-method Man page
drawPlot,Lolliplot-method Man page
drawPlot,MutSpectra-method Man page
drawPlot,Rainfall-method Man page
drawPlot,Waterfall-method Man page
genCov Man page Source code
genCov_alignPlot Source code
genCov_assign_ggplotGrob_height Source code
genCov_assign_ggplotGrob_width Source code
genCov_buildCov Source code
genCov_buildTrack Source code
genCov_extr_ggplotGrob_height Source code
genCov_extr_ggplotGrob_width Source code
genCov_qual Source code
genCov_trackViz Source code
geneViz Man page Source code
geneViz_Granges2dataframe Source code
geneViz_buildGene Source code
geneViz_calcGC Source code
geneViz_cdsFromTXID Source code
geneViz_extrCDS Source code
geneViz_extrUTR Source code
geneViz_formatCDS Source code
geneViz_formatUTR Source code
geneViz_mapCoordSpace Source code
geneViz_mapCovCoordSpace Source code
geneViz_mergeRegions Source code
geneViz_mergeTypeRegions Source code
geneViz_mergeTypes Source code
getData Man page
getData,Clinical-method Man page
getData,ClinicalData-method Man page
getData,Lolliplot-method Man page
getData,LolliplotData-method Man page
getData,MutSpectra-method Man page
getData,MutSpectraPrimaryData-method Man page
getData,Rainfall-method Man page
getData,RainfallPrimaryData-method Man page
getData,Waterfall-method Man page
getData,WaterfallData-method Man page
getDescription Man page
getDescription,VEP-method Man page
getDescription,VEP_Virtual-method Man page
getGrob Man page
getGrob,Lolliplot-method Man page
getGrob,LolliplotPlots-method Man page
getGrob,MutSpectra-method Man page
getGrob,MutSpectraPlots-method Man page
getGrob,Rainfall-method Man page
getGrob,RainfallPlots-method Man page
getGrob,Waterfall-method Man page
getGrob,WaterfallPlots-method Man page
getHeader Man page
getHeader,VEP-method Man page
getHeader,VEP_Virtual-method Man page
getMeta Man page
getMeta,GMS-method Man page
getMeta,GMS_Virtual-method Man page
getMeta,MutationAnnotationFormat-method Man page
getMeta,MutationAnnotationFormat_Virtual-method Man page
getMeta,VEP-method Man page
getMeta,VEP_Virtual-method Man page
getMutation Man page
getMutation,GMS-method Man page
getMutation,GMS_Virtual-method Man page
getMutation,MutationAnnotationFormat-method Man page
getMutation,MutationAnnotationFormat_Virtual-method Man page
getMutation,VEP-method Man page
getMutation,VEP_Virtual-method Man page
getPath Man page
getPath,GMS-method Man page
getPath,MutationAnnotationFormat-method Man page
getPath,VEP-method Man page
getPosition Man page
getPosition,GMS-method Man page
getPosition,GMS_Virtual-method Man page
getPosition,MutationAnnotationFormat-method Man page
getPosition,MutationAnnotationFormat_Virtual-method Man page
getPosition,VEP-method Man page
getPosition,VEP_Virtual-method Man page
getSample Man page
getSample,GMS-method Man page
getSample,GMS_Virtual-method Man page
getSample,MutationAnnotationFormat-method Man page
getSample,MutationAnnotationFormat_Virtual-method Man page
getSample,VEP-method Man page
getSample,VEP_Virtual-method Man page
getVersion Man page
getVersion,GMS-method Man page
getVersion,MutationAnnotationFormat-method Man page
getVersion,VEP-method Man page
hg19chr Man page
ideoView Man page Source code
ideoView_buildMain Source code
ideoView_formatCytobands Source code
ideoView_qual Source code
lohSpec Man page Source code
lohSpec_buildMain Source code
lohSpec_fileGlob Source code
lohSpec_lohCalc Source code
lohSpec_qual Source code
lohSpec_slidingWindow Source code
lohSpec_stepCalc Source code
lohSpec_tileCalc Source code
lohSpec_tilePosition Source code
lohSpec_tileWindow Source code
lohSpec_windowPosition Source code
lohView Man page Source code
lohView_buildMain Source code
lohView_qual Source code
lolliplot Man page Source code
lolliplot_AA2sidechain Man page Source code
lolliplot_Codon2AA Source code
lolliplot_DNAconv Source code
lolliplot_buildMain Man page Source code
lolliplot_constructGene Source code
lolliplot_dodgeCoordX Source code
lolliplot_dodgeCoordY Source code
lolliplot_fetchDomain Source code
lolliplot_mutationObs Source code
lolliplot_qual Source code
lolliplot_reduceLolli Source code
lolliplot_transcriptID2codingSeq Source code
multi_align Source code
multi_buildClin Source code
multi_chrBound Source code
multi_cytobandRet Source code
multi_selectOut Source code
multi_subsetChr Source code
waterfall Man page Source code
waterfall_Custom2anno Source code
waterfall_MAF2anno Source code
waterfall_MGI2anno Source code
waterfall_NA2gene Source code
waterfall_align Source code
waterfall_buildGenePrevelance Source code
waterfall_buildMain Source code
waterfall_buildMutBurden_A Source code
waterfall_buildMutBurden_B Source code
waterfall_build_proportions Source code
waterfall_calcMutFreq Source code
waterfall_geneAlt Source code
waterfall_geneRecurCutoff Source code
waterfall_geneSort Source code
waterfall_hierarchyTRV Source code
waterfall_palette_names Source code
waterfall_qual Source code
waterfall_rmvSilent Source code
waterfall_sampAlt Source code
waterfall_sampSort Source code
waterfall_select_palette Source code
writeData Man page
writeData,GMS-method Man page
writeData,GMS_Virtual Man page
writeData,GMS_Virtual-method Man page
writeData,MutationAnnotationFormat-method Man page
writeData,MutationAnnotationFormat_Virtual Man page
writeData,MutationAnnotationFormat_Virtual-method Man page
writeData,VEP-method Man page
writeData,VEP_Virtual Man page
writeData,VEP_Virtual-method Man page
GenVisR documentation built on Dec. 28, 2020, 2 a.m.

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